Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG82_RS00730 Genome accession   NZ_CP094092
Coordinates   152255..152998 (+) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori strain Hpfe086     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147255..157998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS00705 (MPG82_00705) panD 149417..149767 (+) 351 WP_245082763.1 aspartate 1-decarboxylase -
  MPG82_RS00710 (MPG82_00710) - 149778..150071 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG82_RS00715 (MPG82_00715) - 150071..151066 (+) 996 WP_245083601.1 PDZ domain-containing protein -
  MPG82_RS00720 (MPG82_00720) comB6 151074..152129 (+) 1056 WP_245083602.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG82_RS00725 (MPG82_00725) comB7 152145..152258 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  MPG82_RS00730 (MPG82_00730) comB8 152255..152998 (+) 744 WP_000660524.1 virB8 family protein Machinery gene
  MPG82_RS00735 (MPG82_00735) comB9 152998..153960 (+) 963 WP_245082766.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG82_RS00740 (MPG82_00740) comB10 153953..155089 (+) 1137 WP_245082769.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG82_RS00745 (MPG82_00745) - 155159..156571 (+) 1413 WP_245082773.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG82_RS00750 (MPG82_00750) gmd 156585..157730 (+) 1146 WP_245082798.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=666709 MPG82_RS00730 WP_000660524.1 152255..152998(+) (comB8) [Helicobacter pylori strain Hpfe086]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666709 MPG82_RS00730 WP_000660524.1 152255..152998(+) (comB8) [Helicobacter pylori strain Hpfe086]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAGCACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GCGCCAACTAATAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972