Detailed information NTG0666690

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF86_RS00740
• Genome accession: NZ_CP094091
• Coordinates: 153325..154290 (+)
• Length: 321 a.a.
• NCBI ID: WP_245064539.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe088
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148325..159290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF86_RS00710 (MPF86_00710)	panD	149732..150082 (+)	351	WP_245064535.1	aspartate 1-decarboxylase	-
MPF86_RS00715 (MPF86_00715)	-	150093..150386 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF86_RS00720 (MPF86_00720)	-	150386..151381 (+)	996	WP_245064536.1	PDZ domain-containing protein	-
MPF86_RS00725 (MPF86_00725)	comB6	151389..152444 (+)	1056	WP_245064537.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF86_RS00730 (MPF86_00730)	comB7	152460..152585 (+)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
MPF86_RS00735 (MPF86_00735)	comB8	152582..153325 (+)	744	WP_245064538.1	virB8 family protein	Machinery gene
MPF86_RS00740 (MPF86_00740)	comB9	153325..154290 (+)	966	WP_245064539.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF86_RS00745 (MPF86_00745)	comB10	154283..155419 (+)	1137	WP_245064540.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF86_RS00750 (MPF86_00750)	-	155489..156901 (+)	1413	WP_245064541.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF86_RS00755 (MPF86_00755)	gmd	156915..158060 (+)	1146	WP_245064542.1	GDP-mannose 4,6-dehydratase	-
MPF86_RS00760 (MPF86_00760)	-	158053..158985 (+)	933	WP_180448322.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36915.49 Da
• Isoelectric Point: 9.3756

>NTDB_id=666690 MPF86_RS00740 WP_245064539.1 153325..154290(+) (comB9) [Helicobacter pylori strain Hpfe088]
MRKVLCTLVGFLLAFSALKADDFLEEANETSPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666690 MPF86_RS00740 WP_245064539.1 153325..154290(+) (comB9) [Helicobacter pylori strain Hpfe088]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACATCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCTATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGTTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.935