Detailed information NTG0666687

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPF86_RS00725
• Genome accession: NZ_CP094091
• Coordinates: 151389..152444 (+)
• Length: 351 a.a.
• NCBI ID: WP_245064537.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe088
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146389..157444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF86_RS00695 (MPF86_00695)	-	146830..147243 (+)	414	WP_001023005.1	universal stress protein	-
MPF86_RS00700 (MPF86_00700)	-	147245..147520 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
MPF86_RS00705 (MPF86_00705)	-	147520..149742 (+)	2223	WP_245064534.1	ATP-dependent Clp protease ATP-binding subunit	-
MPF86_RS00710 (MPF86_00710)	panD	149732..150082 (+)	351	WP_245064535.1	aspartate 1-decarboxylase	-
MPF86_RS00715 (MPF86_00715)	-	150093..150386 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPF86_RS00720 (MPF86_00720)	-	150386..151381 (+)	996	WP_245064536.1	PDZ domain-containing protein	-
MPF86_RS00725 (MPF86_00725)	comB6	151389..152444 (+)	1056	WP_245064537.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF86_RS00730 (MPF86_00730)	comB7	152460..152585 (+)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
MPF86_RS00735 (MPF86_00735)	comB8	152582..153325 (+)	744	WP_245064538.1	virB8 family protein	Machinery gene
MPF86_RS00740 (MPF86_00740)	comB9	153325..154290 (+)	966	WP_245064539.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF86_RS00745 (MPF86_00745)	comB10	154283..155419 (+)	1137	WP_245064540.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF86_RS00750 (MPF86_00750)	-	155489..156901 (+)	1413	WP_245064541.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39931.95 Da
• Isoelectric Point: 8.8165

>NTDB_id=666687 MPF86_RS00725 WP_245064537.1 151389..152444(+) (comB6) [Helicobacter pylori strain Hpfe088]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNLFSTSTLTEVLLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666687 MPF86_RS00725 WP_245064537.1 151389..152444(+) (comB6) [Helicobacter pylori strain Hpfe088]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCACTAGCACGCTAACAGAAGTGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTCTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCACATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954