Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MPG15_RS05525 Genome accession   NZ_CP094087
Coordinates   1156303..1157103 (-) Length   266 a.a.
NCBI ID   WP_245079101.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1151303..1162103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS05480 (MPG15_05480) - 1152132..1152917 (-) 786 WP_245079091.1 hypothetical protein -
  MPG15_RS05485 (MPG15_05485) - 1152917..1153298 (-) 382 Protein_1064 DUF1294 domain-containing protein -
  MPG15_RS05490 (MPG15_05490) - 1153395..1153595 (-) 201 WP_245080019.1 hypothetical protein -
  MPG15_RS05495 (MPG15_05495) - 1153649..1153810 (-) 162 WP_245079092.1 lysozyme -
  MPG15_RS05500 (MPG15_05500) - 1153937..1154329 (-) 393 WP_245079093.1 glycoside hydrolase family protein -
  MPG15_RS05505 (MPG15_05505) - 1154340..1154900 (-) 561 WP_245079094.1 hypothetical protein -
  MPG15_RS05510 (MPG15_05510) - 1154884..1155222 (-) 339 WP_245079095.1 hypothetical protein -
  MPG15_RS05515 (MPG15_05515) - 1155410..1155772 (-) 363 WP_245079096.1 tetratricopeptide repeat protein -
  MPG15_RS05520 (MPG15_05520) dprB 1155902..1156306 (-) 405 WP_245079098.1 Holliday junction resolvase RuvX Machinery gene
  MPG15_RS05525 (MPG15_05525) dprA 1156303..1157103 (-) 801 WP_245079101.1 DNA-processing protein DprA Machinery gene
  MPG15_RS05530 (MPG15_05530) minE 1157115..1157348 (-) 234 WP_021304603.1 cell division topological specificity factor MinE -
  MPG15_RS05535 (MPG15_05535) minD 1157345..1158151 (-) 807 WP_245079103.1 septum site-determining protein MinD -
  MPG15_RS05540 (MPG15_05540) ilvC 1158176..1159168 (-) 993 WP_245079104.1 ketol-acid reductoisomerase -
  MPG15_RS05550 (MPG15_05550) - 1159417..1160199 (+) 783 WP_073469754.1 NAD+ synthase -
  MPG15_RS05555 (MPG15_05555) - 1160196..1161134 (+) 939 WP_245079105.1 tetraacyldisaccharide 4'-kinase -
  MPG15_RS05560 (MPG15_05560) pseH 1161067..1161609 (-) 543 WP_000742661.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence


Protein


Download         Length: 266 a.a.        Molecular weight: 29797.63 Da        Isoelectric Point: 7.8026

>NTDB_id=666632 MPG15_RS05525 WP_245079101.1 1156303..1157103(-) (dprA) [Helicobacter pylori strain Hpfe093]
MKSNFQYSALEDIPKAFDILKDPPKNLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGRIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=666632 MPG15_RS05525 WP_245079101.1 1156303..1157103(-) (dprA) [Helicobacter pylori strain Hpfe093]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGGATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAATCT
CTATTGTGTGGGCGATATAAAGCTTTTAGACGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACATACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGCAGTGCTAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTACCTCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ATCATTTAAAAGAAATGCCTGAAATCAAAGATGAATTTTTGGAATATTGTGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAGGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

95.489

100

0.955

  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41