Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG15_RS05520 Genome accession   NZ_CP094087
Coordinates   1155902..1156306 (-) Length   134 a.a.
NCBI ID   WP_245079098.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150902..1161306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS05475 (MPG15_05475) - 1151048..1152142 (-) 1095 WP_245079090.1 hypothetical protein -
  MPG15_RS05480 (MPG15_05480) - 1152132..1152917 (-) 786 WP_245079091.1 hypothetical protein -
  MPG15_RS05485 (MPG15_05485) - 1152917..1153298 (-) 382 Protein_1064 DUF1294 domain-containing protein -
  MPG15_RS05490 (MPG15_05490) - 1153395..1153595 (-) 201 WP_245080019.1 hypothetical protein -
  MPG15_RS05495 (MPG15_05495) - 1153649..1153810 (-) 162 WP_245079092.1 lysozyme -
  MPG15_RS05500 (MPG15_05500) - 1153937..1154329 (-) 393 WP_245079093.1 glycoside hydrolase family protein -
  MPG15_RS05505 (MPG15_05505) - 1154340..1154900 (-) 561 WP_245079094.1 hypothetical protein -
  MPG15_RS05510 (MPG15_05510) - 1154884..1155222 (-) 339 WP_245079095.1 hypothetical protein -
  MPG15_RS05515 (MPG15_05515) - 1155410..1155772 (-) 363 WP_245079096.1 tetratricopeptide repeat protein -
  MPG15_RS05520 (MPG15_05520) dprB 1155902..1156306 (-) 405 WP_245079098.1 Holliday junction resolvase RuvX Machinery gene
  MPG15_RS05525 (MPG15_05525) dprA 1156303..1157103 (-) 801 WP_245079101.1 DNA-processing protein DprA Machinery gene
  MPG15_RS05530 (MPG15_05530) minE 1157115..1157348 (-) 234 WP_021304603.1 cell division topological specificity factor MinE -
  MPG15_RS05535 (MPG15_05535) minD 1157345..1158151 (-) 807 WP_245079103.1 septum site-determining protein MinD -
  MPG15_RS05540 (MPG15_05540) ilvC 1158176..1159168 (-) 993 WP_245079104.1 ketol-acid reductoisomerase -
  MPG15_RS05550 (MPG15_05550) - 1159417..1160199 (+) 783 WP_073469754.1 NAD+ synthase -
  MPG15_RS05555 (MPG15_05555) - 1160196..1161134 (+) 939 WP_245079105.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15306.90 Da        Isoelectric Point: 9.5330

>NTDB_id=666631 MPG15_RS05520 WP_245079098.1 1155902..1156306(-) (dprB) [Helicobacter pylori strain Hpfe093]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666631 MPG15_RS05520 WP_245079098.1 1155902..1156306(-) (dprB) [Helicobacter pylori strain Hpfe093]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TGGGAAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGAAGGTTTTGAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963