Detailed information NTG0666624

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG15_RS00705
• Genome accession: NZ_CP094087
• Coordinates: 152069..153037 (+)
• Length: 322 a.a.
• NCBI ID: WP_245079490.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe093
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147069..158037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG15_RS00675 (MPG15_00675)	panD	148478..148828 (+)	351	WP_245079488.1	aspartate 1-decarboxylase	-
MPG15_RS00680 (MPG15_00680)	-	148839..149132 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG15_RS00685 (MPG15_00685)	-	149132..150127 (+)	996	WP_245079961.1	PDZ domain-containing protein	-
MPG15_RS00690 (MPG15_00690)	comB6	150133..151188 (+)	1056	WP_245079489.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG15_RS00695 (MPG15_00695)	comB7	151204..151329 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG15_RS00700 (MPG15_00700)	comB8	151326..152069 (+)	744	WP_000660529.1	virB8 family protein	Machinery gene
MPG15_RS00705 (MPG15_00705)	comB9	152069..153037 (+)	969	WP_245079490.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG15_RS00710 (MPG15_00710)	comB10	153030..154166 (+)	1137	WP_245079491.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG15_RS00715 (MPG15_00715)	-	154236..155648 (+)	1413	WP_245079492.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG15_RS00720 (MPG15_00720)	gmd	155662..156807 (+)	1146	WP_245079493.1	GDP-mannose 4,6-dehydratase	-
MPG15_RS00725 (MPG15_00725)	-	156800..157732 (+)	933	WP_245079494.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 37129.65 Da
• Isoelectric Point: 9.3412

>NTDB_id=666624 MPG15_RS00705 WP_245079490.1 152069..153037(+) (comB9) [Helicobacter pylori strain Hpfe093]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGK
DE

Nucleotide

• Length: 969 bp

>NTDB_id=666624 MPG15_RS00705 WP_245079490.1 152069..153037(+) (comB9) [Helicobacter pylori strain Hpfe093]
ATGCGTAAGGTTTTATACGCTCTTGTGGGTTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTA
TCGCTGAAGATGTCTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAA
GATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.172	100	0.953