Detailed information NTG0666621

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG15_RS00690
• Genome accession: NZ_CP094087
• Coordinates: 150133..151188 (+)
• Length: 351 a.a.
• NCBI ID: WP_245079489.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe093
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145133..156188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG15_RS00660 (MPG15_00660)	-	145558..145971 (+)	414	WP_001023005.1	universal stress protein	-
MPG15_RS00665 (MPG15_00665)	-	145991..146266 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG15_RS00670 (MPG15_00670)	-	146266..148488 (+)	2223	WP_245079487.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG15_RS00675 (MPG15_00675)	panD	148478..148828 (+)	351	WP_245079488.1	aspartate 1-decarboxylase	-
MPG15_RS00680 (MPG15_00680)	-	148839..149132 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG15_RS00685 (MPG15_00685)	-	149132..150127 (+)	996	WP_245079961.1	PDZ domain-containing protein	-
MPG15_RS00690 (MPG15_00690)	comB6	150133..151188 (+)	1056	WP_245079489.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG15_RS00695 (MPG15_00695)	comB7	151204..151329 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG15_RS00700 (MPG15_00700)	comB8	151326..152069 (+)	744	WP_000660529.1	virB8 family protein	Machinery gene
MPG15_RS00705 (MPG15_00705)	comB9	152069..153037 (+)	969	WP_245079490.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG15_RS00710 (MPG15_00710)	comB10	153030..154166 (+)	1137	WP_245079491.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG15_RS00715 (MPG15_00715)	-	154236..155648 (+)	1413	WP_245079492.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39910.90 Da
• Isoelectric Point: 8.8165

>NTDB_id=666621 MPG15_RS00690 WP_245079489.1 150133..151188(+) (comB6) [Helicobacter pylori strain Hpfe093]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFINDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPVSSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666621 MPG15_RS00690 WP_245079489.1 150133..151188(+) (comB6) [Helicobacter pylori strain Hpfe093]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAACGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTACAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTATTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCACATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCACCCGTTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963