Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG15_RS00700 Genome accession   NZ_CP094087
Coordinates   151326..152069 (+) Length   247 a.a.
NCBI ID   WP_000660529.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146326..157069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS00675 (MPG15_00675) panD 148478..148828 (+) 351 WP_245079488.1 aspartate 1-decarboxylase -
  MPG15_RS00680 (MPG15_00680) - 148839..149132 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG15_RS00685 (MPG15_00685) - 149132..150127 (+) 996 WP_245079961.1 PDZ domain-containing protein -
  MPG15_RS00690 (MPG15_00690) comB6 150133..151188 (+) 1056 WP_245079489.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG15_RS00695 (MPG15_00695) comB7 151204..151329 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG15_RS00700 (MPG15_00700) comB8 151326..152069 (+) 744 WP_000660529.1 virB8 family protein Machinery gene
  MPG15_RS00705 (MPG15_00705) comB9 152069..153037 (+) 969 WP_245079490.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG15_RS00710 (MPG15_00710) comB10 153030..154166 (+) 1137 WP_245079491.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG15_RS00715 (MPG15_00715) - 154236..155648 (+) 1413 WP_245079492.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG15_RS00720 (MPG15_00720) gmd 155662..156807 (+) 1146 WP_245079493.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=666623 MPG15_RS00700 WP_000660529.1 151326..152069(+) (comB8) [Helicobacter pylori strain Hpfe093]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666623 MPG15_RS00700 WP_000660529.1 151326..152069(+) (comB8) [Helicobacter pylori strain Hpfe093]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTATAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976