Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG55_RS00785 | Genome accession | NZ_CP094083 |
| Coordinates | 161078..162214 (+) | Length | 378 a.a. |
| NCBI ID | WP_245028772.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe096 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 156078..167214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG55_RS00750 (MPG55_00750) | panD | 156527..156877 (+) | 351 | WP_000142213.1 | aspartate 1-decarboxylase | - |
| MPG55_RS00755 (MPG55_00755) | - | 156888..157181 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG55_RS00760 (MPG55_00760) | - | 157181..158176 (+) | 996 | WP_245028763.1 | PDZ domain-containing protein | - |
| MPG55_RS00765 (MPG55_00765) | comB6 | 158184..159239 (+) | 1056 | WP_245028765.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG55_RS00770 (MPG55_00770) | comB7 | 159255..159380 (+) | 126 | WP_231172561.1 | comB7 lipoprotein | Machinery gene |
| MPG55_RS00775 (MPG55_00775) | comB8 | 159377..160120 (+) | 744 | WP_245028767.1 | virB8 family protein | Machinery gene |
| MPG55_RS00780 (MPG55_00780) | comB9 | 160120..161085 (+) | 966 | WP_245028769.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG55_RS00785 (MPG55_00785) | comB10 | 161078..162214 (+) | 1137 | WP_245028772.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG55_RS00790 (MPG55_00790) | - | 162284..163696 (+) | 1413 | WP_245028774.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG55_RS00795 (MPG55_00795) | gmd | 163710..164855 (+) | 1146 | WP_120935627.1 | GDP-mannose 4,6-dehydratase | - |
| MPG55_RS00800 (MPG55_00800) | - | 164848..165780 (+) | 933 | WP_245028776.1 | GDP-L-fucose synthase | - |
| MPG55_RS00805 (MPG55_00805) | hypE | 166021..167019 (-) | 999 | WP_245016237.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42248.85 Da Isoelectric Point: 9.8254
>NTDB_id=666584 MPG55_RS00785 WP_245028772.1 161078..162214(+) (comB10) [Helicobacter pylori strain Hpfe096]
MNKWIKGTLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
TLKALNSKEMNSYKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTDAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGTLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
TLKALNSKEMNSYKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTDAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSRIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666584 MPG55_RS00785 WP_245028772.1 161078..162214(+) (comB10) [Helicobacter pylori strain Hpfe096]
ATGAATAAGTGGATTAAGGGGACGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATCTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
ACTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTATAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTGACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGACGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATCTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
ACTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTATAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTGACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAGAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.444 |
100 |
0.944 |