Detailed information NTG0666580

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG55_RS00765
• Genome accession: NZ_CP094083
• Coordinates: 158184..159239 (+)
• Length: 351 a.a.
• NCBI ID: WP_245028765.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe096
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 153184..164239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG55_RS00735 (MPG55_00735)	-	153610..154023 (+)	414	WP_245028759.1	universal stress protein	-
MPG55_RS00740 (MPG55_00740)	-	154043..154318 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
MPG55_RS00745 (MPG55_00745)	-	154318..156537 (+)	2220	WP_245028761.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG55_RS00750 (MPG55_00750)	panD	156527..156877 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG55_RS00755 (MPG55_00755)	-	156888..157181 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG55_RS00760 (MPG55_00760)	-	157181..158176 (+)	996	WP_245028763.1	PDZ domain-containing protein	-
MPG55_RS00765 (MPG55_00765)	comB6	158184..159239 (+)	1056	WP_245028765.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG55_RS00770 (MPG55_00770)	comB7	159255..159380 (+)	126	WP_231172561.1	comB7 lipoprotein	Machinery gene
MPG55_RS00775 (MPG55_00775)	comB8	159377..160120 (+)	744	WP_245028767.1	virB8 family protein	Machinery gene
MPG55_RS00780 (MPG55_00780)	comB9	160120..161085 (+)	966	WP_245028769.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG55_RS00785 (MPG55_00785)	comB10	161078..162214 (+)	1137	WP_245028772.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG55_RS00790 (MPG55_00790)	-	162284..163696 (+)	1413	WP_245028774.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39897.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=666580 MPG55_RS00765 WP_245028765.1 158184..159239(+) (comB6) [Helicobacter pylori strain Hpfe096]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VIALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSTRESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666580 MPG55_RS00765 WP_245028765.1 158184..159239(+) (comB6) [Helicobacter pylori strain Hpfe096]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGTGCAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGATAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972