Detailed information NTG0666583

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG55_RS00780
• Genome accession: NZ_CP094083
• Coordinates: 160120..161085 (+)
• Length: 321 a.a.
• NCBI ID: WP_245028769.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe096
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 155120..166085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG55_RS00750 (MPG55_00750)	panD	156527..156877 (+)	351	WP_000142213.1	aspartate 1-decarboxylase	-
MPG55_RS00755 (MPG55_00755)	-	156888..157181 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG55_RS00760 (MPG55_00760)	-	157181..158176 (+)	996	WP_245028763.1	PDZ domain-containing protein	-
MPG55_RS00765 (MPG55_00765)	comB6	158184..159239 (+)	1056	WP_245028765.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG55_RS00770 (MPG55_00770)	comB7	159255..159380 (+)	126	WP_231172561.1	comB7 lipoprotein	Machinery gene
MPG55_RS00775 (MPG55_00775)	comB8	159377..160120 (+)	744	WP_245028767.1	virB8 family protein	Machinery gene
MPG55_RS00780 (MPG55_00780)	comB9	160120..161085 (+)	966	WP_245028769.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG55_RS00785 (MPG55_00785)	comB10	161078..162214 (+)	1137	WP_245028772.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG55_RS00790 (MPG55_00790)	-	162284..163696 (+)	1413	WP_245028774.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG55_RS00795 (MPG55_00795)	gmd	163710..164855 (+)	1146	WP_120935627.1	GDP-mannose 4,6-dehydratase	-
MPG55_RS00800 (MPG55_00800)	-	164848..165780 (+)	933	WP_245028776.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36920.45 Da
• Isoelectric Point: 9.4631

>NTDB_id=666583 MPG55_RS00780 WP_245028769.1 160120..161085(+) (comB9) [Helicobacter pylori strain Hpfe096]
MRKVLYALVGFLLAFSALKADDFLEEANETASANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNSNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQRGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666583 MPG55_RS00780 WP_245028769.1 160120..161085(+) (comB9) [Helicobacter pylori strain Hpfe096]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCTCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAGCAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGATATTCAAAGAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.355	100	0.941