Detailed information NTG0666560

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG63_RS00745
• Genome accession: NZ_CP094082
• Coordinates: 151330..152292 (+)
• Length: 320 a.a.
• NCBI ID: WP_245047383.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe097
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 146330..157292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG63_RS00715 (MPG63_00715)	panD	147730..148080 (+)	351	WP_245047379.1	aspartate 1-decarboxylase	-
MPG63_RS00720 (MPG63_00720)	-	148091..148384 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG63_RS00725 (MPG63_00725)	-	148384..149379 (+)	996	WP_245048100.1	PDZ domain-containing protein	-
MPG63_RS00730 (MPG63_00730)	comB6	149394..150449 (+)	1056	WP_245047381.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG63_RS00735 (MPG63_00735)	comB7	150465..150590 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
MPG63_RS00740 (MPG63_00740)	comB8	150587..151330 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG63_RS00745 (MPG63_00745)	comB9	151330..152292 (+)	963	WP_245047383.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG63_RS00750 (MPG63_00750)	comB10	152285..153421 (+)	1137	WP_245047385.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG63_RS00755 (MPG63_00755)	-	153487..154899 (+)	1413	WP_245047391.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG63_RS00760 (MPG63_00760)	gmd	154913..156058 (+)	1146	WP_245047393.1	GDP-mannose 4,6-dehydratase	-
MPG63_RS00765 (MPG63_00765)	-	156051..156983 (+)	933	WP_245047395.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36808.42 Da
• Isoelectric Point: 9.3756

>NTDB_id=666560 MPG63_RS00745 WP_245047383.1 151330..152292(+) (comB9) [Helicobacter pylori strain Hpfe097]
MRKVLCTLVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFSDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666560 MPG63_RS00745 WP_245047383.1 151330..152292(+) (comB9) [Helicobacter pylori strain Hpfe097]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGTTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCA
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAGCGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938