Detailed information NTG0666557

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG63_RS00730
• Genome accession: NZ_CP094082
• Coordinates: 149394..150449 (+)
• Length: 351 a.a.
• NCBI ID: WP_245047381.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe097
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144394..155449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG63_RS00700 (MPG63_00700)	-	144823..145236 (+)	414	WP_001023005.1	universal stress protein	-
MPG63_RS00705 (MPG63_00705)	-	145243..145518 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
MPG63_RS00710 (MPG63_00710)	-	145518..147740 (+)	2223	WP_245047377.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG63_RS00715 (MPG63_00715)	panD	147730..148080 (+)	351	WP_245047379.1	aspartate 1-decarboxylase	-
MPG63_RS00720 (MPG63_00720)	-	148091..148384 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG63_RS00725 (MPG63_00725)	-	148384..149379 (+)	996	WP_245048100.1	PDZ domain-containing protein	-
MPG63_RS00730 (MPG63_00730)	comB6	149394..150449 (+)	1056	WP_245047381.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG63_RS00735 (MPG63_00735)	comB7	150465..150590 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
MPG63_RS00740 (MPG63_00740)	comB8	150587..151330 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPG63_RS00745 (MPG63_00745)	comB9	151330..152292 (+)	963	WP_245047383.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG63_RS00750 (MPG63_00750)	comB10	152285..153421 (+)	1137	WP_245047385.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG63_RS00755 (MPG63_00755)	-	153487..154899 (+)	1413	WP_245047391.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39839.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=666557 MPG63_RS00730 WP_245047381.1 149394..150449(+) (comB6) [Helicobacter pylori strain Hpfe097]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666557 MPG63_RS00730 WP_245047381.1 149394..150449(+) (comB6) [Helicobacter pylori strain Hpfe097]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTTGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGTGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTCTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974