Detailed information NTG0666539

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG38_RS00870
• Genome accession: NZ_CP094080
• Coordinates: 195557..196522 (+)
• Length: 321 a.a.
• NCBI ID: WP_245101324.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe099
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 190557..201522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG38_RS00840 (MPG38_00840)	panD	191970..192320 (+)	351	WP_156608295.1	aspartate 1-decarboxylase	-
MPG38_RS00845 (MPG38_00845)	-	192331..192624 (+)	294	WP_245101323.1	YbaB/EbfC family nucleoid-associated protein	-
MPG38_RS00850 (MPG38_00850)	-	192624..193619 (+)	996	WP_245101628.1	PDZ domain-containing protein	-
MPG38_RS00855 (MPG38_00855)	comB6	193627..194682 (+)	1056	WP_245101629.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG38_RS00860 (MPG38_00860)	comB7	194698..194823 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG38_RS00865 (MPG38_00865)	comB8	194820..195557 (+)	738	WP_220934235.1	virB8 family protein	Machinery gene
MPG38_RS00870 (MPG38_00870)	comB9	195557..196522 (+)	966	WP_245101324.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG38_RS00875 (MPG38_00875)	comB10	196515..197651 (+)	1137	WP_245011877.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG38_RS00880 (MPG38_00880)	-	197721..199133 (+)	1413	WP_245101325.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG38_RS00885 (MPG38_00885)	gmd	199147..200292 (+)	1146	WP_180503157.1	GDP-mannose 4,6-dehydratase	-
MPG38_RS00890 (MPG38_00890)	-	200285..201217 (+)	933	WP_245101326.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36913.46 Da
• Isoelectric Point: 9.4631

>NTDB_id=666539 MPG38_RS00870 WP_245101324.1 195557..196522(+) (comB9) [Helicobacter pylori strain Hpfe099]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKSLKEEKEETKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDRQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666539 MPG38_RS00870 WP_245101324.1 195557..196522(+) (comB9) [Helicobacter pylori strain Hpfe099]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAACACCCTTGAAAAGGCTCCCACAAACAATAACAAATCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAGGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTC
TAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATCATCG
CTGAAGATGTGTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGCAAGGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.798	100	0.922