Detailed information NTG0666536

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG38_RS00855
• Genome accession: NZ_CP094080
• Coordinates: 193627..194682 (+)
• Length: 351 a.a.
• NCBI ID: WP_245101629.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe099
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188627..199682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG38_RS00825 (MPG38_00825)	-	189039..189452 (+)	414	WP_001023005.1	universal stress protein	-
MPG38_RS00830 (MPG38_00830)	-	189483..189758 (+)	276	WP_050839826.1	ATP-dependent Clp protease adaptor ClpS	-
MPG38_RS00835 (MPG38_00835)	-	189758..191980 (+)	2223	WP_245101322.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG38_RS00840 (MPG38_00840)	panD	191970..192320 (+)	351	WP_156608295.1	aspartate 1-decarboxylase	-
MPG38_RS00845 (MPG38_00845)	-	192331..192624 (+)	294	WP_245101323.1	YbaB/EbfC family nucleoid-associated protein	-
MPG38_RS00850 (MPG38_00850)	-	192624..193619 (+)	996	WP_245101628.1	PDZ domain-containing protein	-
MPG38_RS00855 (MPG38_00855)	comB6	193627..194682 (+)	1056	WP_245101629.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG38_RS00860 (MPG38_00860)	comB7	194698..194823 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG38_RS00865 (MPG38_00865)	comB8	194820..195557 (+)	738	WP_220934235.1	virB8 family protein	Machinery gene
MPG38_RS00870 (MPG38_00870)	comB9	195557..196522 (+)	966	WP_245101324.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG38_RS00875 (MPG38_00875)	comB10	196515..197651 (+)	1137	WP_245011877.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG38_RS00880 (MPG38_00880)	-	197721..199133 (+)	1413	WP_245101325.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39897.92 Da
• Isoelectric Point: 8.8165

>NTDB_id=666536 MPG38_RS00855 WP_245101629.1 193627..194682(+) (comB6) [Helicobacter pylori strain Hpfe099]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALMFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666536 MPG38_RS00855 WP_245101629.1 193627..194682(+) (comB6) [Helicobacter pylori strain Hpfe099]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTAATGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
TCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTATGAGAGAAAGTGCCACCAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969