Detailed information NTG0666477

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG56_RS00725
• Genome accession: NZ_CP094076
• Coordinates: 149800..150762 (+)
• Length: 320 a.a.
• NCBI ID: WP_245043838.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe102
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144800..155762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG56_RS00695 (MPG56_00695)	panD	146209..146559 (+)	351	WP_245043836.1	aspartate 1-decarboxylase	-
MPG56_RS00700 (MPG56_00700)	-	146570..146863 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG56_RS00705 (MPG56_00705)	-	146863..147858 (+)	996	WP_245044427.1	PDZ domain-containing protein	-
MPG56_RS00710 (MPG56_00710)	comB6	147864..148919 (+)	1056	WP_245044429.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG56_RS00715 (MPG56_00715)	comB7	148935..149060 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG56_RS00720 (MPG56_00720)	comB8	149057..149800 (+)	744	WP_000660545.1	virB8 family protein	Machinery gene
MPG56_RS00725 (MPG56_00725)	comB9	149800..150762 (+)	963	WP_245043838.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG56_RS00730 (MPG56_00730)	comB10	150755..151891 (+)	1137	WP_245043840.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG56_RS00735 (MPG56_00735)	-	151961..153373 (+)	1413	WP_245043842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG56_RS00740 (MPG56_00740)	gmd	153387..154532 (+)	1146	WP_245043844.1	GDP-mannose 4,6-dehydratase	-
MPG56_RS00745 (MPG56_00745)	-	154525..155457 (+)	933	WP_024117278.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36753.34 Da
• Isoelectric Point: 9.3756

>NTDB_id=666477 MPG56_RS00725 WP_245043838.1 149800..150762(+) (comB9) [Helicobacter pylori strain Hpfe102]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666477 MPG56_RS00725 WP_245043838.1 149800..150762(+) (comB9) [Helicobacter pylori strain Hpfe102]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938