Detailed information NTG0666474

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG56_RS00710
• Genome accession: NZ_CP094076
• Coordinates: 147864..148919 (+)
• Length: 351 a.a.
• NCBI ID: WP_245044429.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe102
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142864..153919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG56_RS00680 (MPG56_00680)	-	143289..143702 (+)	414	WP_001023005.1	universal stress protein	-
MPG56_RS00685 (MPG56_00685)	-	143722..143997 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG56_RS00690 (MPG56_00690)	-	143997..146219 (+)	2223	WP_245043834.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG56_RS00695 (MPG56_00695)	panD	146209..146559 (+)	351	WP_245043836.1	aspartate 1-decarboxylase	-
MPG56_RS00700 (MPG56_00700)	-	146570..146863 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG56_RS00705 (MPG56_00705)	-	146863..147858 (+)	996	WP_245044427.1	PDZ domain-containing protein	-
MPG56_RS00710 (MPG56_00710)	comB6	147864..148919 (+)	1056	WP_245044429.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG56_RS00715 (MPG56_00715)	comB7	148935..149060 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG56_RS00720 (MPG56_00720)	comB8	149057..149800 (+)	744	WP_000660545.1	virB8 family protein	Machinery gene
MPG56_RS00725 (MPG56_00725)	comB9	149800..150762 (+)	963	WP_245043838.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG56_RS00730 (MPG56_00730)	comB10	150755..151891 (+)	1137	WP_245043840.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG56_RS00735 (MPG56_00735)	-	151961..153373 (+)	1413	WP_245043842.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39909.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=666474 MPG56_RS00710 WP_245044429.1 147864..148919(+) (comB6) [Helicobacter pylori strain Hpfe102]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMFFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSTSMRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666474 MPG56_RS00710 WP_245044429.1 147864..148919(+) (comB6) [Helicobacter pylori strain Hpfe102]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATGGTGTGGTCGCTTTAGCGTTCATGTTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTACTTCTATGAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969