Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG56_RS00720 Genome accession   NZ_CP094076
Coordinates   149057..149800 (+) Length   247 a.a.
NCBI ID   WP_000660545.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144057..154800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS00695 (MPG56_00695) panD 146209..146559 (+) 351 WP_245043836.1 aspartate 1-decarboxylase -
  MPG56_RS00700 (MPG56_00700) - 146570..146863 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  MPG56_RS00705 (MPG56_00705) - 146863..147858 (+) 996 WP_245044427.1 PDZ domain-containing protein -
  MPG56_RS00710 (MPG56_00710) comB6 147864..148919 (+) 1056 WP_245044429.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG56_RS00715 (MPG56_00715) comB7 148935..149060 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG56_RS00720 (MPG56_00720) comB8 149057..149800 (+) 744 WP_000660545.1 virB8 family protein Machinery gene
  MPG56_RS00725 (MPG56_00725) comB9 149800..150762 (+) 963 WP_245043838.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG56_RS00730 (MPG56_00730) comB10 150755..151891 (+) 1137 WP_245043840.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG56_RS00735 (MPG56_00735) - 151961..153373 (+) 1413 WP_245043842.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG56_RS00740 (MPG56_00740) gmd 153387..154532 (+) 1146 WP_245043844.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28657.89 Da        Isoelectric Point: 8.9546

>NTDB_id=666476 MPG56_RS00720 WP_000660545.1 149057..149800(+) (comB8) [Helicobacter pylori strain Hpfe102]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666476 MPG56_RS00720 WP_000660545.1 149057..149800(+) (comB8) [Helicobacter pylori strain Hpfe102]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATCTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTATAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976