Detailed information NTG0666415

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG62_RS00720
• Genome accession: NZ_CP094071
• Coordinates: 150850..151986 (+)
• Length: 378 a.a.
• NCBI ID: WP_245099453.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe106
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145850..156986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG62_RS00685 (MPG62_00685)	panD	146282..146632 (+)	351	WP_245099447.1	aspartate 1-decarboxylase	-
MPG62_RS00690 (MPG62_00690)	-	146643..146936 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG62_RS00695 (MPG62_00695)	-	146936..147931 (+)	996	WP_245099449.1	PDZ domain-containing protein	-
MPG62_RS00700 (MPG62_00700)	comB6	147937..148992 (+)	1056	WP_245100069.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG62_RS00705 (MPG62_00705)	comB7	149008..149133 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG62_RS00710 (MPG62_00710)	-	149130..149874 (+)	745	Protein_139	virB8 family protein	-
MPG62_RS00715 (MPG62_00715)	comB9	149874..150857 (+)	984	WP_245099451.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG62_RS00720 (MPG62_00720)	comB10	150850..151986 (+)	1137	WP_245099453.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG62_RS00725 (MPG62_00725)	-	152056..153468 (+)	1413	WP_245099454.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG62_RS00730 (MPG62_00730)	gmd	153483..154628 (+)	1146	WP_245099455.1	GDP-mannose 4,6-dehydratase	-
MPG62_RS00735 (MPG62_00735)	-	154621..155553 (+)	933	WP_245099456.1	GDP-L-fucose synthase	-
MPG62_RS00740 (MPG62_00740)	hypE	155805..156803 (-)	999	WP_096398881.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42116.74 Da
• Isoelectric Point: 9.9555

>NTDB_id=666415 MPG62_RS00720 WP_245099453.1 150850..151986(+) (comB10) [Helicobacter pylori strain Hpfe106]
MNKWLKGAIVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDLKANTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=666415 MPG62_RS00720 WP_245099453.1 150850..151986(+) (comB10) [Helicobacter pylori strain Hpfe106]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTACCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACTATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGACTTAAAAGC
AAACACAACTCCTCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GTCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.825	100	0.968