Detailed information NTG0666412

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG62_RS00700
• Genome accession: NZ_CP094071
• Coordinates: 147937..148992 (+)
• Length: 351 a.a.
• NCBI ID: WP_245100069.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe106
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142937..153992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG62_RS00670 (MPG62_00670)	-	143362..143775 (+)	414	WP_001023005.1	universal stress protein	-
MPG62_RS00675 (MPG62_00675)	-	143795..144070 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG62_RS00680 (MPG62_00680)	-	144070..146292 (+)	2223	WP_245099445.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG62_RS00685 (MPG62_00685)	panD	146282..146632 (+)	351	WP_245099447.1	aspartate 1-decarboxylase	-
MPG62_RS00690 (MPG62_00690)	-	146643..146936 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG62_RS00695 (MPG62_00695)	-	146936..147931 (+)	996	WP_245099449.1	PDZ domain-containing protein	-
MPG62_RS00700 (MPG62_00700)	comB6	147937..148992 (+)	1056	WP_245100069.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG62_RS00705 (MPG62_00705)	comB7	149008..149133 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG62_RS00710 (MPG62_00710)	-	149130..149874 (+)	745	Protein_139	virB8 family protein	-
MPG62_RS00715 (MPG62_00715)	comB9	149874..150857 (+)	984	WP_245099451.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG62_RS00720 (MPG62_00720)	comB10	150850..151986 (+)	1137	WP_245099453.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG62_RS00725 (MPG62_00725)	-	152056..153468 (+)	1413	WP_245099454.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39671.57 Da
• Isoelectric Point: 8.8165

>NTDB_id=666412 MPG62_RS00700 WP_245100069.1 147937..148992(+) (comB6) [Helicobacter pylori strain Hpfe106]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666412 MPG62_RS00700 WP_245100069.1 147937..148992(+) (comB6) [Helicobacter pylori strain Hpfe106]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTAGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGATTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGTCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969