Detailed information NTG0666414

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG62_RS00715
• Genome accession: NZ_CP094071
• Coordinates: 149874..150857 (+)
• Length: 327 a.a.
• NCBI ID: WP_245099451.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe106
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144874..155857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG62_RS00685 (MPG62_00685)	panD	146282..146632 (+)	351	WP_245099447.1	aspartate 1-decarboxylase	-
MPG62_RS00690 (MPG62_00690)	-	146643..146936 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG62_RS00695 (MPG62_00695)	-	146936..147931 (+)	996	WP_245099449.1	PDZ domain-containing protein	-
MPG62_RS00700 (MPG62_00700)	comB6	147937..148992 (+)	1056	WP_245100069.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG62_RS00705 (MPG62_00705)	comB7	149008..149133 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG62_RS00710 (MPG62_00710)	-	149130..149874 (+)	745	Protein_139	virB8 family protein	-
MPG62_RS00715 (MPG62_00715)	comB9	149874..150857 (+)	984	WP_245099451.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG62_RS00720 (MPG62_00720)	comB10	150850..151986 (+)	1137	WP_245099453.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG62_RS00725 (MPG62_00725)	-	152056..153468 (+)	1413	WP_245099454.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG62_RS00730 (MPG62_00730)	gmd	153483..154628 (+)	1146	WP_245099455.1	GDP-mannose 4,6-dehydratase	-
MPG62_RS00735 (MPG62_00735)	-	154621..155553 (+)	933	WP_245099456.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37763.46 Da
• Isoelectric Point: 9.1962

>NTDB_id=666414 MPG62_RS00715 WP_245099451.1 149874..150857(+) (comB9) [Helicobacter pylori strain Hpfe106]
MRKVLYALMGFLLAFSTLKADDFLEEANETAPAHLNHPMHDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENTPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKAKDE

Nucleotide

• Length: 984 bp

>NTDB_id=666414 MPG62_RS00715 WP_245099451.1 149874..150857(+) (comB9) [Helicobacter pylori strain Hpfe106]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCACATTTAAACCACCCCATGCATGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCTAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGACTTTGTTTTAGGGGATAAGGTGGGTTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAATGCTTTTATGAAGCCACAAAATAAAGAAAATGCCCTTGAAAATACCCCCACAAACAACAAGCCTTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAAACGATAACCATTGGCGATAACACTAATG
CAATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCACTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATAGCTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTT
GTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.958	100	0.951