Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG12_RS00900 | Genome accession | NZ_CP094062 |
| Coordinates | 194010..195146 (+) | Length | 378 a.a. |
| NCBI ID | WP_245046005.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe118 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 189010..200146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG12_RS00865 (MPG12_00865) | panD | 189465..189815 (+) | 351 | WP_000142210.1 | aspartate 1-decarboxylase | - |
| MPG12_RS00870 (MPG12_00870) | - | 189826..190119 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG12_RS00875 (MPG12_00875) | - | 190119..191114 (+) | 996 | WP_245046000.1 | PDZ domain-containing protein | - |
| MPG12_RS00880 (MPG12_00880) | comB6 | 191122..192177 (+) | 1056 | WP_245046002.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG12_RS00885 (MPG12_00885) | comB7 | 192193..192318 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG12_RS00890 (MPG12_00890) | comB8 | 192315..193052 (+) | 738 | WP_245046003.1 | virB8 family protein | Machinery gene |
| MPG12_RS00895 (MPG12_00895) | comB9 | 193052..194017 (+) | 966 | WP_245046004.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG12_RS00900 (MPG12_00900) | comB10 | 194010..195146 (+) | 1137 | WP_245046005.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG12_RS00905 (MPG12_00905) | - | 195216..196628 (+) | 1413 | WP_245046007.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG12_RS00910 (MPG12_00910) | gmd | 196642..197787 (+) | 1146 | WP_245046008.1 | GDP-mannose 4,6-dehydratase | - |
| MPG12_RS00915 (MPG12_00915) | - | 197780..198712 (+) | 933 | WP_001002433.1 | GDP-L-fucose synthase | - |
| MPG12_RS00920 (MPG12_00920) | hypE | 198962..199960 (-) | 999 | WP_245046010.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42124.76 Da Isoelectric Point: 10.0017
>NTDB_id=666265 MPG12_RS00900 WP_245046005.1 194010..195146(+) (comB10) [Helicobacter pylori strain Hpfe118]
MNKWLKGVLVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESNIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGVLVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESNIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666265 MPG12_RS00900 WP_245046005.1 194010..195146(+) (comB10) [Helicobacter pylori strain Hpfe118]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCACAAGTGGAGAGCAATATTTTTGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCACAAGTGGAGAGCAATATTTTTGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.296 |
100 |
0.963 |