Detailed information NTG0666264

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG12_RS00895
• Genome accession: NZ_CP094062
• Coordinates: 193052..194017 (+)
• Length: 321 a.a.
• NCBI ID: WP_245046004.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe118
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188052..199017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG12_RS00865 (MPG12_00865)	panD	189465..189815 (+)	351	WP_000142210.1	aspartate 1-decarboxylase	-
MPG12_RS00870 (MPG12_00870)	-	189826..190119 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG12_RS00875 (MPG12_00875)	-	190119..191114 (+)	996	WP_245046000.1	PDZ domain-containing protein	-
MPG12_RS00880 (MPG12_00880)	comB6	191122..192177 (+)	1056	WP_245046002.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG12_RS00885 (MPG12_00885)	comB7	192193..192318 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG12_RS00890 (MPG12_00890)	comB8	192315..193052 (+)	738	WP_245046003.1	virB8 family protein	Machinery gene
MPG12_RS00895 (MPG12_00895)	comB9	193052..194017 (+)	966	WP_245046004.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG12_RS00900 (MPG12_00900)	comB10	194010..195146 (+)	1137	WP_245046005.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG12_RS00905 (MPG12_00905)	-	195216..196628 (+)	1413	WP_245046007.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG12_RS00910 (MPG12_00910)	gmd	196642..197787 (+)	1146	WP_245046008.1	GDP-mannose 4,6-dehydratase	-
MPG12_RS00915 (MPG12_00915)	-	197780..198712 (+)	933	WP_001002433.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36895.55 Da
• Isoelectric Point: 9.3802

>NTDB_id=666264 MPG12_RS00895 WP_245046004.1 193052..194017(+) (comB9) [Helicobacter pylori strain Hpfe118]
MRKVLCALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKNYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666264 MPG12_RS00895 WP_245046004.1 193052..194017(+) (comB9) [Helicobacter pylori strain Hpfe118]
ATGCGTAAGGTTTTATGTGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCTGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGTTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGTGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGAACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.411	100	0.928