Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   MPG39_RS00710 Genome accession   NZ_CP094059
Coordinates   146653..147615 (+) Length   320 a.a.
NCBI ID   WP_245080556.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141653..152615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS00680 (MPG39_00680) panD 143060..143410 (+) 351 WP_245080548.1 aspartate 1-decarboxylase -
  MPG39_RS00685 (MPG39_00685) - 143421..143714 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG39_RS00690 (MPG39_00690) - 143714..144709 (+) 996 WP_245080551.1 PDZ domain-containing protein -
  MPG39_RS00695 (MPG39_00695) comB6 144717..145772 (+) 1056 WP_180608952.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG39_RS00700 (MPG39_00700) comB7 145788..145913 (+) 126 WP_245080553.1 comB7 lipoprotein Machinery gene
  MPG39_RS00705 (MPG39_00705) comB8 145910..146653 (+) 744 WP_000660545.1 virB8 family protein Machinery gene
  MPG39_RS00710 (MPG39_00710) comB9 146653..147615 (+) 963 WP_245080556.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG39_RS00715 (MPG39_00715) comB10 147608..148744 (+) 1137 WP_245080558.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG39_RS00720 (MPG39_00720) - 148814..150229 (+) 1416 WP_245080560.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG39_RS00725 (MPG39_00725) gmd 150240..151385 (+) 1146 WP_245080563.1 GDP-mannose 4,6-dehydratase -
  MPG39_RS00730 (MPG39_00730) - 151378..152310 (+) 933 WP_245080565.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36832.38 Da        Isoelectric Point: 9.3412

>NTDB_id=666220 MPG39_RS00710 WP_245080556.1 146653..147615(+) (comB9) [Helicobacter pylori strain Hpfe122]
MRKVLYALVGFLLAFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSDAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=666220 MPG39_RS00710 WP_245080556.1 146653..147615(+) (comB9) [Helicobacter pylori strain Hpfe122]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGCTAGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCATCCCATGCAGGATTTAAACGCCATTCAGGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCCTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGATTTGATGCGAAAATCTTAGAAAG
CAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCGACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGTATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATCTATAAAGTCGTTGATGGCTATGACAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.331

100

0.941