Detailed information NTG0666217

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG39_RS00695
• Genome accession: NZ_CP094059
• Coordinates: 144717..145772 (+)
• Length: 351 a.a.
• NCBI ID: WP_180608952.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe122
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 139717..150772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG39_RS00665 (MPG39_00665)	-	140140..140553 (+)	414	WP_245080542.1	universal stress protein	-
MPG39_RS00670 (MPG39_00670)	-	140573..140848 (+)	276	WP_245081254.1	ATP-dependent Clp protease adaptor ClpS	-
MPG39_RS00675 (MPG39_00675)	-	140848..143070 (+)	2223	WP_245080545.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG39_RS00680 (MPG39_00680)	panD	143060..143410 (+)	351	WP_245080548.1	aspartate 1-decarboxylase	-
MPG39_RS00685 (MPG39_00685)	-	143421..143714 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG39_RS00690 (MPG39_00690)	-	143714..144709 (+)	996	WP_245080551.1	PDZ domain-containing protein	-
MPG39_RS00695 (MPG39_00695)	comB6	144717..145772 (+)	1056	WP_180608952.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG39_RS00700 (MPG39_00700)	comB7	145788..145913 (+)	126	WP_245080553.1	comB7 lipoprotein	Machinery gene
MPG39_RS00705 (MPG39_00705)	comB8	145910..146653 (+)	744	WP_000660545.1	virB8 family protein	Machinery gene
MPG39_RS00710 (MPG39_00710)	comB9	146653..147615 (+)	963	WP_245080556.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG39_RS00715 (MPG39_00715)	comB10	147608..148744 (+)	1137	WP_245080558.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG39_RS00720 (MPG39_00720)	-	148814..150229 (+)	1416	WP_245080560.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39811.77 Da
• Isoelectric Point: 8.8165

>NTDB_id=666217 MPG39_RS00695 WP_180608952.1 144717..145772(+) (comB6) [Helicobacter pylori strain Hpfe122]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666217 MPG39_RS00695 WP_180608952.1 144717..145772(+) (comB6) [Helicobacter pylori strain Hpfe122]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTAGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977