Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IOMTU433_RS01660 Genome accession   NZ_AP014649
Coordinates   353295..354113 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain IOMTU433     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348295..359113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU433_RS20465 - 348877..349007 (-) 131 Protein_315 hypothetical protein -
  IOMTU433_RS01630 (IOMTU433_0326) rpoZ 349046..349324 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IOMTU433_RS01635 (IOMTU433_0327) gmk 349397..350026 (-) 630 WP_000015937.1 guanylate kinase -
  IOMTU433_RS01640 (IOMTU433_0328) ispH 350149..351099 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IOMTU433_RS01645 (IOMTU433_0329) fimU 351269..351742 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  IOMTU433_RS01650 (IOMTU433_0330) pilV 351736..352296 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IOMTU433_RS01655 (IOMTU433_0331) pilW 352297..353298 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  IOMTU433_RS01660 (IOMTU433_0332) pilX 353295..354113 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IOMTU433_RS01665 (IOMTU433_0333) pilY1 354125..357979 (+) 3855 WP_045543713.1 PilC/PilY family type IV pilus protein Machinery gene
  IOMTU433_RS01670 (IOMTU433_0334) pilY2 357992..358474 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  IOMTU433_RS01675 (IOMTU433_0335) pilE 358471..358896 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=66618 IOMTU433_RS01660 WP_000149374.1 353295..354113(+) (pilX) [Acinetobacter baumannii strain IOMTU433]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=66618 IOMTU433_RS01660 WP_000149374.1 353295..354113(+) (pilX) [Acinetobacter baumannii strain IOMTU433]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment