Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | IOMTU433_RS01645 | Genome accession | NZ_AP014649 |
| Coordinates | 351269..351742 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214065.1 | Uniprot ID | N9K1Q3 |
| Organism | Acinetobacter baumannii strain IOMTU433 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 346269..356742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IOMTU433_RS01625 (IOMTU433_0325) | - | 346732..348837 (-) | 2106 | WP_001117590.1 | HD domain-containing protein | - |
| IOMTU433_RS20465 | - | 348877..349007 (-) | 131 | Protein_315 | hypothetical protein | - |
| IOMTU433_RS01630 (IOMTU433_0326) | rpoZ | 349046..349324 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| IOMTU433_RS01635 (IOMTU433_0327) | gmk | 349397..350026 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| IOMTU433_RS01640 (IOMTU433_0328) | ispH | 350149..351099 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| IOMTU433_RS01645 (IOMTU433_0329) | fimU | 351269..351742 (+) | 474 | WP_001214065.1 | GspH/FimT family pseudopilin | Machinery gene |
| IOMTU433_RS01650 (IOMTU433_0330) | pilV | 351736..352296 (+) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| IOMTU433_RS01655 (IOMTU433_0331) | pilW | 352297..353298 (+) | 1002 | WP_000079200.1 | PilW family protein | Machinery gene |
| IOMTU433_RS01660 (IOMTU433_0332) | pilX | 353295..354113 (+) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16837.43 Da Isoelectric Point: 8.5355
>NTDB_id=66615 IOMTU433_RS01645 WP_001214065.1 351269..351742(+) (fimU) [Acinetobacter baumannii strain IOMTU433]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=66615 IOMTU433_RS01645 WP_001214065.1 351269..351742(+) (fimU) [Acinetobacter baumannii strain IOMTU433]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |