Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG10_RS00795 | Genome accession | NZ_CP094051 |
| Coordinates | 158757..159893 (+) | Length | 378 a.a. |
| NCBI ID | WP_245061324.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe127 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 153757..164893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG10_RS00760 (MPG10_00760) | panD | 154208..154558 (+) | 351 | WP_245061320.1 | aspartate 1-decarboxylase | - |
| MPG10_RS00765 (MPG10_00765) | - | 154569..154862 (+) | 294 | WP_000347923.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG10_RS00770 (MPG10_00770) | - | 154862..155857 (+) | 996 | WP_245061321.1 | PDZ domain-containing protein | - |
| MPG10_RS00775 (MPG10_00775) | comB6 | 155863..156918 (+) | 1056 | WP_245061873.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG10_RS00780 (MPG10_00780) | comB7 | 156934..157059 (+) | 126 | WP_024117273.1 | hypothetical protein | Machinery gene |
| MPG10_RS00785 (MPG10_00785) | comB8 | 157056..157799 (+) | 744 | WP_245061322.1 | virB8 family protein | Machinery gene |
| MPG10_RS00790 (MPG10_00790) | comB9 | 157799..158764 (+) | 966 | WP_245061323.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG10_RS00795 (MPG10_00795) | comB10 | 158757..159893 (+) | 1137 | WP_245061324.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG10_RS00800 (MPG10_00800) | - | 159963..161375 (+) | 1413 | WP_245061325.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG10_RS00805 (MPG10_00805) | gmd | 161389..162534 (+) | 1146 | WP_245061326.1 | GDP-mannose 4,6-dehydratase | - |
| MPG10_RS00810 (MPG10_00810) | - | 162527..163459 (+) | 933 | WP_180527709.1 | GDP-L-fucose synthase | - |
| MPG10_RS00815 (MPG10_00815) | hypE | 163711..164709 (-) | 999 | WP_245061327.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42057.58 Da Isoelectric Point: 9.9312
>NTDB_id=666115 MPG10_RS00795 WP_245061324.1 158757..159893(+) (comB10) [Helicobacter pylori strain Hpfe127]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDSKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDSKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666115 MPG10_RS00795 WP_245061324.1 158757..159893(+) (comB10) [Helicobacter pylori strain Hpfe127]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTCAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTTATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGTAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTTTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTCAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTTATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGTAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTTTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |