Detailed information NTG0666114

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG10_RS00790
• Genome accession: NZ_CP094051
• Coordinates: 157799..158764 (+)
• Length: 321 a.a.
• NCBI ID: WP_245061323.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe127
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 152799..163764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG10_RS00760 (MPG10_00760)	panD	154208..154558 (+)	351	WP_245061320.1	aspartate 1-decarboxylase	-
MPG10_RS00765 (MPG10_00765)	-	154569..154862 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
MPG10_RS00770 (MPG10_00770)	-	154862..155857 (+)	996	WP_245061321.1	PDZ domain-containing protein	-
MPG10_RS00775 (MPG10_00775)	comB6	155863..156918 (+)	1056	WP_245061873.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG10_RS00780 (MPG10_00780)	comB7	156934..157059 (+)	126	WP_024117273.1	hypothetical protein	Machinery gene
MPG10_RS00785 (MPG10_00785)	comB8	157056..157799 (+)	744	WP_245061322.1	virB8 family protein	Machinery gene
MPG10_RS00790 (MPG10_00790)	comB9	157799..158764 (+)	966	WP_245061323.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG10_RS00795 (MPG10_00795)	comB10	158757..159893 (+)	1137	WP_245061324.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG10_RS00800 (MPG10_00800)	-	159963..161375 (+)	1413	WP_245061325.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG10_RS00805 (MPG10_00805)	gmd	161389..162534 (+)	1146	WP_245061326.1	GDP-mannose 4,6-dehydratase	-
MPG10_RS00810 (MPG10_00810)	-	162527..163459 (+)	933	WP_180527709.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36911.45 Da
• Isoelectric Point: 9.4631

>NTDB_id=666114 MPG10_RS00790 WP_245061323.1 157799..158764(+) (comB9) [Helicobacter pylori strain Hpfe127]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSRPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666114 MPG10_RS00790 WP_245061323.1 157799..158764(+) (comB9) [Helicobacter pylori strain Hpfe127]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGACTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAGACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCTCTACAAATTGGTGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAACCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931