Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG10_RS00785 Genome accession   NZ_CP094051
Coordinates   157056..157799 (+) Length   247 a.a.
NCBI ID   WP_245061322.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152056..162799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS00760 (MPG10_00760) panD 154208..154558 (+) 351 WP_245061320.1 aspartate 1-decarboxylase -
  MPG10_RS00765 (MPG10_00765) - 154569..154862 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  MPG10_RS00770 (MPG10_00770) - 154862..155857 (+) 996 WP_245061321.1 PDZ domain-containing protein -
  MPG10_RS00775 (MPG10_00775) comB6 155863..156918 (+) 1056 WP_245061873.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG10_RS00780 (MPG10_00780) comB7 156934..157059 (+) 126 WP_024117273.1 hypothetical protein Machinery gene
  MPG10_RS00785 (MPG10_00785) comB8 157056..157799 (+) 744 WP_245061322.1 virB8 family protein Machinery gene
  MPG10_RS00790 (MPG10_00790) comB9 157799..158764 (+) 966 WP_245061323.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG10_RS00795 (MPG10_00795) comB10 158757..159893 (+) 1137 WP_245061324.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG10_RS00800 (MPG10_00800) - 159963..161375 (+) 1413 WP_245061325.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG10_RS00805 (MPG10_00805) gmd 161389..162534 (+) 1146 WP_245061326.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28679.89 Da        Isoelectric Point: 8.3165

>NTDB_id=666113 MPG10_RS00785 WP_245061322.1 157056..157799(+) (comB8) [Helicobacter pylori strain Hpfe127]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINHIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666113 MPG10_RS00785 WP_245061322.1 157056..157799(+) (comB8) [Helicobacter pylori strain Hpfe127]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGACTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCACATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972