Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MOP87_RS05885 Genome accession   NZ_CP093940
Coordinates   1318403..1320619 (+) Length   738 a.a.
NCBI ID   WP_111475459.1    Uniprot ID   -
Organism   Pseudomonas sp. I3-I5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313403..1325619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP87_RS05865 (MOP87_05865) - 1315267..1315890 (+) 624 WP_242810238.1 glutathione S-transferase -
  MOP87_RS05870 (MOP87_05870) - 1316036..1316968 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  MOP87_RS05875 (MOP87_05875) - 1316965..1317744 (+) 780 WP_023533108.1 ABC transporter permease -
  MOP87_RS05880 (MOP87_05880) - 1317628..1318260 (-) 633 WP_115933573.1 DUF2062 domain-containing protein -
  MOP87_RS05885 (MOP87_05885) comA 1318403..1320619 (+) 2217 WP_111475459.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MOP87_RS05890 (MOP87_05890) exbB 1320681..1321316 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MOP87_RS05895 (MOP87_05895) - 1321313..1321747 (+) 435 WP_028687688.1 biopolymer transporter ExbD -
  MOP87_RS05900 (MOP87_05900) lpxK 1321747..1322748 (+) 1002 WP_111475460.1 tetraacyldisaccharide 4'-kinase -
  MOP87_RS05905 (MOP87_05905) - 1322791..1322976 (+) 186 WP_003247142.1 Trm112 family protein -
  MOP87_RS05910 (MOP87_05910) kdsB 1322973..1323734 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MOP87_RS05915 (MOP87_05915) - 1323734..1324198 (+) 465 WP_028687685.1 low molecular weight protein-tyrosine-phosphatase -
  MOP87_RS05920 (MOP87_05920) murB 1324195..1325214 (+) 1020 WP_028687684.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79512.21 Da        Isoelectric Point: 10.4736

>NTDB_id=665747 MOP87_RS05885 WP_111475459.1 1318403..1320619(+) (comA) [Pseudomonas sp. I3-I5]
MRTGMLALALGLLSLGLVPQLPSVGWLLLLAAGAVVSLFTRGWLLGVFLLGFCWACWSAKQAMDDRLAPGLEGRTLWLEG
RVVGLPARTAQGVRFDLEGAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPGGLLNPYGPDREAQLLARRVGASG
TVKAGELLTPAPASWRDALRERLLAVEANGRQAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYTFSARLGAWQPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDILFRALALVAQQRPAWVPPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLVALW
APREPVPDGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLRKLGVDSLDLLVVSHAHADHAGGAG
AIGRGLPIRRAIGGEPLEAVPLQPCVSGEQWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSSEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALHLVLGVQG
KVEGMRSQRRFWRDARGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=665747 MOP87_RS05885 WP_111475459.1 1318403..1320619(+) (comA) [Pseudomonas sp. I3-I5]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGTCTGCTCAGCCTCGGCCTGGTGCCTCAACTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGGCGGGCGCTGTCGTCAGTCTGTTCACCCGCGGGTGGTTGCTGGGCGTGTTCCTGCTGGGCTTTTGCT
GGGCCTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCAGGGCTCGAGGGTCGCACGTTATGGCTGGAAGGG
CGCGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTCGACCTTGAGGGGGCGCATTCCCGGCGTGCCGAATT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCGGGCGGGCTTTTGAACCCCTACGGGCCTGACCGGGAGGCGCAGTTGCTGGCACGTCGGGTCGGCGCCAGCGGA
ACGGTCAAAGCCGGGGAGTTACTGACGCCCGCGCCAGCCAGCTGGCGCGATGCGCTGCGCGAGCGGCTACTGGCTGTCGA
GGCCAATGGTCGGCAAGCCGCGCTGGTGGCGCTGGTGCTTGGCGATGGGGCAGGCCTGGCACGCGAGGACTGGCAGGCGC
TACAGGCAACCGGCACCGTGCACCTGCTGGTGATTTCGGGCCAGCACATCGGCCTGGTGGCGGGTCTGCTCTACGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTGCCTTGGGCCTGTGCGCTGGCCATGAGTGC
GGCGCTGGCCTACGGCTGGCTGGCTGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGGCTGCGCTTTCGTCATCTGGGTGCGTTTCACCCCTTGTTACTTGCGCTGGTTGCCGTACTGCTGTTCGAGCCATTG
GCAGCGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
TTGGCAACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCAGTGCTGCTGGCGGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGCTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCTTGGCGGTATTGCCGCTGGCGCTA
TTGGGCACCTTGTTGCTGCCCTTGGGAAGCGCAGGTGAGGCCTTGCTGTGGCTGGCAGGCGGCCTGCTGGATATCTTGTT
TCGCGCCTTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGTGCGGTGATGCTCGTGGCGCTCTGG
GCACCTCGCGAGCCTGTCCCGGATGGCCAGGTCGAGGTGTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCAGCCAGGGGCGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGACCACGCCGGCGGTGCAGGT
GCAATCGGGCGCGGGCTGCCGATCAGGCGGGCGATTGGCGGTGAGCCGCTGGAAGCGGTTCCGTTACAGCCTTGCGTCAG
TGGCGAGCAGTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAACGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGCGAGCGGTTGCTGCTGGCCGGGGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGAGCGAAGCCTTCAT
CCGCGCTGCGGCCCCGCGTGGGGTACTGATATCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGACATGGCATGACCCTTCACGACACGGCGGTGGAGGGGGCGTTGCATCTGGTGCTCGGTGTGCAAGGA
AAGGTCGAGGGTATGCGCAGCCAGCGCCGGTTCTGGCGTGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.554

97.425

0.57
  comA Ralstonia pseudosolanacearum GMI1000

35.294

100

0.374