Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MOP87_RS05890 Genome accession   NZ_CP093940
Coordinates   1320681..1321316 (+) Length   211 a.a.
NCBI ID   WP_023533075.1    Uniprot ID   -
Organism   Pseudomonas sp. I3-I5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315681..1326316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP87_RS05870 (MOP87_05870) - 1316036..1316968 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  MOP87_RS05875 (MOP87_05875) - 1316965..1317744 (+) 780 WP_023533108.1 ABC transporter permease -
  MOP87_RS05880 (MOP87_05880) - 1317628..1318260 (-) 633 WP_115933573.1 DUF2062 domain-containing protein -
  MOP87_RS05885 (MOP87_05885) comA 1318403..1320619 (+) 2217 WP_111475459.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MOP87_RS05890 (MOP87_05890) exbB 1320681..1321316 (+) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MOP87_RS05895 (MOP87_05895) - 1321313..1321747 (+) 435 WP_028687688.1 biopolymer transporter ExbD -
  MOP87_RS05900 (MOP87_05900) lpxK 1321747..1322748 (+) 1002 WP_111475460.1 tetraacyldisaccharide 4'-kinase -
  MOP87_RS05905 (MOP87_05905) - 1322791..1322976 (+) 186 WP_003247142.1 Trm112 family protein -
  MOP87_RS05910 (MOP87_05910) kdsB 1322973..1323734 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MOP87_RS05915 (MOP87_05915) - 1323734..1324198 (+) 465 WP_028687685.1 low molecular weight protein-tyrosine-phosphatase -
  MOP87_RS05920 (MOP87_05920) murB 1324195..1325214 (+) 1020 WP_028687684.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22847.12 Da        Isoelectric Point: 7.3616

>NTDB_id=665748 MOP87_RS05890 WP_023533075.1 1320681..1321316(+) (exbB) [Pseudomonas sp. I3-I5]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=665748 MOP87_RS05890 WP_023533075.1 1320681..1321316(+) (exbB) [Pseudomonas sp. I3-I5]
GTGTGGGAATTGGTCAAGTCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCTCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCTTGGGGGAGATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCATGAGCTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTAGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCAAAGGCCCTGGTAACTACCGCA
GCCGGGCTGATGGTCGGTATCCCGGCGGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTGGAGGTGATTCAGGGGGACCGCGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825