Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SCSC_RS01750 Genome accession   NZ_AP014647
Coordinates   339531..341489 (+) Length   652 a.a.
NCBI ID   WP_006270051.1    Uniprot ID   A0AAD2SVG1
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 334531..346489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS01735 (SCSC_0359) pbp2X 334831..337089 (+) 2259 WP_006270111.1 penicillin-binding protein PBP2X -
  SCSC_RS01740 (SCSC_0360) mraY 337091..338074 (+) 984 WP_006270115.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SCSC_RS01745 (SCSC_0361) - 338285..339220 (-) 936 WP_006269888.1 IS30 family transposase -
  SCSC_RS01750 (SCSC_0362) amiA 339531..341489 (+) 1959 WP_006270051.1 peptide ABC transporter substrate-binding protein Regulator
  SCSC_RS01760 (SCSC_0364) - 341945..342826 (+) 882 WP_003070319.1 class II fructose-bisphosphate aldolase -
  SCSC_RS01770 (SCSC_0366) - 343258..343704 (+) 447 WP_003025913.1 LytTR family DNA-binding domain-containing protein -
  SCSC_RS01775 (SCSC_0367) - 343710..344372 (+) 663 WP_006270081.1 hypothetical protein -
  SCSC_RS01780 (SCSC_0368) rpmB 344507..344695 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  SCSC_RS01785 (SCSC_0369) - 344889..345254 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72482.63 Da        Isoelectric Point: 8.2688

>NTDB_id=66544 SCSC_RS01750 WP_006270051.1 339531..341489(+) (amiA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKSSKWIIATGVVLSTGILLAGCGKSTSNTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
VDDYTVQYTLSRTEPYWNSKTTNNILFPVNSDFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKSSTQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGAAKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLTD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGADNVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENAKIKAVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSALTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
QKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=66544 SCSC_RS01750 WP_006270051.1 339531..341489(+) (amiA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTGCTAAGCACTGGAATCTTATTAGCAGGTTGTGGCAAGTCAAC
TTCTAATACGTCAACATACTCATATGTGTATACACAAGATCCAGACACGTTGAATTATCTGATGGCTAATCGTGCGACAA
CTTCAGATGTTGTGACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGAAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACCTATACCTATAAATTACGTAAAGACGCAAAATGGTACACATCAGAAGGTGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTGACAGGTTTGAAATATGCTGCAGATAATAAATCTGAAGCCCTTTACC
TTGTGCAAGATTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAACAGTTGGTGTGAAAGCT
GTAGATGATTATACAGTACAGTATACTTTAAGTCGTACGGAACCTTATTGGAATTCAAAAACAACTAATAATATTCTCTT
TCCAGTGAATTCGGACTTTTTGAAATCACAAGGAAAGAATTTTGGTTCTGTGAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CACTTGGACAATATCAAATTGACTTATTATGATGGATCAGACCAAGAAGCGCTTATCCGAAACTTCACAGATGGCGCCTA
TAGTGCGGCTCGTCTCTATCCAAATAGTTCAAGTTTTGCTTCTGTCAAGAAACAATATGCCAACAATATCATCTATAGTT
TACAAGATGCAACTAGTTATTATTACAATTTTAACTTAAATCGTCAGTCTTACAATCACACATCTAAGAAAACAGATGCT
CAAAAATCTTCAACGCAAGAAGCGGTACTAAACAAAGCCTTTCGTCAAGCTATCAACTTTGCTTATAACCGCACTTCTTA
CGGTGCACAAAGTAATGGGAAAGATGGTGCAGCAAAGGTGTTGCGGAACACGCTCGTGCCACCAACATTTGTTTCCATTG
GAGATAAGACTTTTGGCGATGTGGTATCCTCTAAGTTAGTAAATTATGGTTCAGAATGGTCTAATATGAATCTGACTGAT
GCGCAAGATGCTTACTACAATCCAGAAAAAGCAAAAGCTAAATTTGCTCAGGCAAAAGCAGAATTGCAGGCCAAAGGTGT
TCAATTTCCCATTCACTTAGACGTACCAGCTGATCAAACTAGTAAAATCGGTGTTCAGTGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTCTTAGGAGCCGATAATGTTGTGATTGATATTCAGCAGATGAGCTCAGATGAACTGAACAATATCAGT
TATTTTGCCAATACTGCCGCTCAAAAAGATTATGATTTGTACAATGGTGGTTGGTCAGGAGACTATCAAGACCCATCCAC
TTATCTAGATACCTTGAATACTAAAAATGGTGGTAGTTTGCAGAACTTTGGCTTAGAACCAGGTCAAGAGAATGCTAAGA
TAAAGGCTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAACGTTATGAA
AAATATGCTGAAGCACAAGCGTGGTTGATTGATAGTGCTTTGACAATGCCTAATCTCTCTCTTGGAGGGACTCCGTCTGT
GACAAAGACTGTTCCGTTTAGTCGTTCTTACTCTCTGGTAGGGATTAAAGGTGGTTCAAGCAACTACTTTAAATATGTTA
AATTACAAGATAAAATTGTGACGACTAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCGTCTAAT
CAAAAAGCACAAGATGATTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.295

100

0.587
  amiA3 Streptococcus thermophilus LMD-9

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMG 18311

57.382

100

0.578

Multiple sequence alignment