Detailed information NTG0665380

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG623_RS23820
• Genome accession: NZ_CP108688
• Coordinates: 5318008..5319306 (+)
• Length: 432 a.a.
• NCBI ID: WP_406149122.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01012
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5313008..5324306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG623_RS23790 (OG623_23720)	-	5313964..5314158 (+)	195	WP_205020323.1	hypothetical protein	-
OG623_RS23805 (OG623_23735)	tig	5314791..5316221 (+)	1431	WP_406149121.1	trigger factor	-
OG623_RS23810 (OG623_23740)	-	5316494..5317099 (+)	606	WP_406151973.1	ATP-dependent Clp protease proteolytic subunit	-
OG623_RS23815 (OG623_23745)	clpP	5317167..5317850 (+)	684	WP_362886120.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG623_RS23820 (OG623_23750)	clpX	5318008..5319306 (+)	1299	WP_406149122.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG623_RS23825 (OG623_23755)	-	5319449..5319781 (+)	333	WP_406149123.1	type II toxin-antitoxin system RelE/ParE family toxin	-
OG623_RS23830 (OG623_23760)	-	5319778..5320083 (+)	306	WP_406149124.1	helix-turn-helix domain-containing protein	-
OG623_RS23835 (OG623_23765)	-	5320157..5321167 (-)	1011	WP_406149126.1	hypothetical protein	-
OG623_RS23840 (OG623_23770)	-	5321307..5323928 (+)	2622	WP_406149127.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47357.16 Da
• Isoelectric Point: 4.7780

>NTDB_id=665380 OG623_RS23820 WP_406149122.1 5318008..5319306(+) (clpX) [Streptomyces sp. NBC_01012]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGANRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYDVPSRKDVARVVIT
PDVVRNNVNPTLVPREPRAIGKNDDGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=665380 OG623_RS23820 WP_406149122.1 5318008..5319306(+) (clpX) [Streptomyces sp. NBC_01012]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTGCGGTGGGAGGAGCTCCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCTGTGTACAACCACTACAAGCGGGTCCAGGCCGGGGAGAACGGCGGCGGCGCGAATCG
CGACGACGCCATCGAGCTGGCCAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCGGGCAAGACGCTCCTCGCCCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGTGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTATCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTACCGCCGCAGGGCGGACGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCCTTCTCGGGCCTGGAGAAGATCATCGAGTCGCGGGCCGGCGC
CAAGGGCATCGGCTTCGGGGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCGGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATTCTGGTCGAGCCGCGTAACGCCCTGGTGAAGCAGTACCAACGACTGTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCGCTTGAGGCCATCGCCGACCAGGCGATCCTCCGCCAGACCGGCGCGCGTGGTCTGC
GCGCCATCATGGAAGAGGTCCTGCAGTCCGTGATGTACGACGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
CCGGACGTCGTCCGCAACAACGTCAACCCGACCCTGGTCCCGCGCGAACCGCGCGCGATCGGCAAGAACGACGACGGCCG
CCACGAGAAGTCCGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.056	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.155	95.37	0.507