NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	MOW04_RS12990	Genome accession	NZ_CP093546
Coordinates	2517855..2518472 (-)	Length	205 a.a.
NCBI ID	WP_163130615.1	Uniprot ID	-
Organism	Bacillus sp. K1
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2512855..2523472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOW04_RS12960	rpsT	2513157..2513423 (+)	267	WP_003229989.1	30S ribosomal protein S20	-
MOW04_RS12965	holA	2513438..2514481 (-)	1044	WP_015251674.1	DNA polymerase III subunit delta	-
MOW04_RS12970	-	2514521..2514670 (-)	150	WP_003229985.1	hypothetical protein	-
MOW04_RS12975	-	2514711..2514845 (+)	135	WP_003229983.1	YqzM family protein	-
MOW04_RS12980	comEC	2514885..2517215 (-)	2331	WP_163130618.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
MOW04_RS12985	-	2517219..2517788 (-)	570	WP_003229978.1	ComE operon protein 2	-
MOW04_RS12990	comEA	2517855..2518472 (-)	618	WP_163130615.1	competence protein ComEA	Machinery gene
MOW04_RS12995	comER	2518556..2519377 (+)	822	WP_014480313.1	late competence protein ComER	-
MOW04_RS13000	-	2519443..2520186 (-)	744	WP_163130612.1	class I SAM-dependent methyltransferase	-
MOW04_RS13005	rsfS	2520183..2520539 (-)	357	WP_014477391.1	ribosome silencing factor	-
MOW04_RS13010	yqeK	2520557..2521117 (-)	561	WP_014480316.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
MOW04_RS13015	-	2521107..2521676 (-)	570	WP_004398676.1	nicotinate-nucleotide adenylyltransferase	-
MOW04_RS13020	yhbY	2521688..2521978 (-)	291	WP_003226133.1	ribosome assembly RNA-binding protein YhbY	-
MOW04_RS13025	aroE	2521972..2522814 (-)	843	WP_003229967.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21803.47 Da Isoelectric Point: 4.7220

                                >NTDB_id=665158 MOW04_RS12990 WP_163130615.1 2517855..2518472(-) (comEA) [Bacillus sp. K1]

MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT

GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV

GPSKAEAIIAYREENGRFQTFEDITKVSGIGEKSFEKIKSSITVK

Nucleotide

Download Length: 618 bp

                                >NTDB_id=665158 MOW04_RS12990 WP_163130615.1 2517855..2518472(-) (comEA) [Bacillus sp. K1]

ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT

GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA

ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA

GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA

GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG

TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG

GGACCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGACGTTTCCAAACATTTGAAGATATCACTAAGGT

TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Bacillus subtilis subsp. subtilis str. 168	99.512	100	0.995
comEA	Staphylococcus aureus MW2	36.818	100	0.395
comEA	Staphylococcus aureus N315	35.909	100	0.385

Detailed information NTG0665158