Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MOV58_RS08110 Genome accession   NZ_CP093539
Coordinates   1610775..1611647 (-) Length   290 a.a.
NCBI ID   WP_002455422.1    Uniprot ID   A0A974L0C4
Organism   Staphylococcus hominis strain C5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1606236..1627480 1610775..1611647 within 0


Gene organization within MGE regions


Location: 1606236..1627480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV58_RS08095 (MOV58_08095) xerC 1606236..1607129 (-) 894 WP_002448815.1 tyrosine recombinase XerC -
  MOV58_RS08100 (MOV58_08100) trmFO 1607235..1608542 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MOV58_RS08105 (MOV58_08105) topA 1608567..1610636 (-) 2070 WP_077700432.1 type I DNA topoisomerase -
  MOV58_RS08110 (MOV58_08110) dprA 1610775..1611647 (-) 873 WP_002455422.1 DNA-processing protein DprA Machinery gene
  MOV58_RS08115 (MOV58_08115) sucD 1611905..1612810 (-) 906 WP_077700431.1 succinate--CoA ligase subunit alpha -
  MOV58_RS08120 (MOV58_08120) sucC 1612832..1613998 (-) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  MOV58_RS08125 (MOV58_08125) - 1614126..1614893 (-) 768 WP_002455424.1 ribonuclease HII -
  MOV58_RS08130 (MOV58_08130) ylqF 1614877..1615761 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -
  MOV58_RS08135 (MOV58_08135) - 1616017..1618623 (+) 2607 WP_077700430.1 YfhO family protein -
  MOV58_RS08140 (MOV58_08140) - 1618613..1621237 (+) 2625 WP_077700429.1 YfhO family protein -
  MOV58_RS08145 (MOV58_08145) - 1621628..1622132 (+) 505 Protein_1576 transposase -
  MOV58_RS08150 (MOV58_08150) rplS 1622180..1622530 (-) 351 WP_002448843.1 50S ribosomal protein L19 -
  MOV58_RS08155 (MOV58_08155) trmD 1622635..1623372 (-) 738 WP_002455428.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MOV58_RS08160 (MOV58_08160) rimM 1623372..1623872 (-) 501 WP_049431853.1 ribosome maturation factor RimM -
  MOV58_RS08165 (MOV58_08165) rpsP 1624004..1624279 (-) 276 WP_002448807.1 30S ribosomal protein S16 -
  MOV58_RS08170 (MOV58_08170) ffh 1624541..1625911 (-) 1371 WP_002448737.1 signal recognition particle protein -
  MOV58_RS08175 (MOV58_08175) - 1625932..1626264 (-) 333 WP_242413862.1 putative DNA-binding protein -
  MOV58_RS08180 (MOV58_08180) ftsY 1626251..1627480 (-) 1230 WP_049336508.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33573.69 Da        Isoelectric Point: 8.9933

>NTDB_id=665098 MOV58_RS08110 WP_002455422.1 1610775..1611647(-) (dprA) [Staphylococcus hominis strain C5]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLNN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=665098 MOV58_RS08110 WP_002455422.1 1610775..1611647(-) (dprA) [Staphylococcus hominis strain C5]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGTTTTTTAAACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369