Detailed information NTG0665003

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG393_RS21910
• Genome accession: NZ_CP108677
• Coordinates: 4917246..4918529 (+)
• Length: 427 a.a.
• NCBI ID: WP_147978018.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01216
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4912246..4923529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG393_RS21880 (OG393_21915)	-	4913214..4913408 (+)	195	WP_327376373.1	hypothetical protein	-
OG393_RS21895 (OG393_21930)	tig	4914122..4915516 (+)	1395	WP_327376374.1	trigger factor	-
OG393_RS21900 (OG393_21935)	clpP	4915750..4916367 (+)	618	WP_327376375.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG393_RS21905 (OG393_21940)	clpP	4916414..4917091 (+)	678	WP_327376376.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG393_RS21910 (OG393_21945)	clpX	4917246..4918529 (+)	1284	WP_147978018.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG393_RS21915 (OG393_21950)	-	4918807..4919781 (-)	975	WP_327376377.1	hypothetical protein	-
OG393_RS21920 (OG393_21955)	-	4919919..4922540 (+)	2622	WP_327376378.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46727.59 Da
• Isoelectric Point: 4.8724

>NTDB_id=665003 OG393_RS21910 WP_147978018.1 4917246..4918529(+) (clpX) [Streptomyces sp. NBC_01216]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHNNVNPTLVPRIVKNDGRHEKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=665003 OG393_RS21910 WP_147978018.1 4917246..4918529(+) (clpX) [Streptomyces sp. NBC_01216]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGATGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTGCAGGCCGGTGAGAACGGCGGCGCGCAGGGCCG
CGACGACGCCATCGAGCTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACCGGCTCCGGCAAGACGTTGCTCGCGCAGA
CCCTGGCCCGGATGCTCAACGTCCCCTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCCGGCTACGTCGGCGAGGAC
GTCGAGAACATTCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGGAAGAGCGAGAACCCGTCGATCACCCGCGACGTCAGCGGTGAGGGCGTGCAGCAGGCCC
TTCTCAAGATCCTGGAGGGCACCACGGCCTCCGTCCCGCCGCAGGGCGGCCGGAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGCGCCGGTGC
CAAGGGCATCGGTTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGTGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGCCTGCCCGTGCTGACCTCCGTCCACAACCTGGACCGA
GAGGCACTGCTCCAGATTCTGGTCGAGCCCCGCAACGCCCTGGTCAAGCAGTACCAGCGACTCTTCGAACTGGACGGCGT
GGAGCTGGACTTCGACCGTCCGGCGCTCGAGGCCATCGCCGATCAGGCGATCCTGCGCGGCACGGGCGCACGTGGCCTGC
GGGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTGCCGTCCCGTAAGGACGTGGCCCGTGTGGTCATCACG
GCGGACGTGGTGCACAACAACGTCAACCCGACGCTGGTGCCGCGGATCGTGAAGAACGACGGCCGTCACGAGAAGAGCGC
CTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	94.145	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.528	96.253	0.515