Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   APT55_RS13570 Genome accession   NZ_AP014642
Coordinates   2901313..2901693 (+) Length   126 a.a.
NCBI ID   WP_017288634.1    Uniprot ID   -
Organism   Leptolyngbya boryana dg5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896313..2906693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT55_RS13555 (LBDG_27030) - 2897968..2898369 (-) 402 WP_017288637.1 YMGG-like glycine zipper-containing protein -
  APT55_RS13560 (LBDG_27040) - 2898658..2900172 (-) 1515 WP_017288636.1 UbiD family decarboxylase -
  APT55_RS13565 (LBDG_27050) - 2900400..2901209 (+) 810 WP_017288635.1 hypothetical protein -
  APT55_RS13570 (LBDG_27060) pilH 2901313..2901693 (+) 381 WP_017288634.1 PleD family two-component system response regulator Machinery gene
  APT55_RS13575 (LBDG_27070) - 2901853..2902158 (+) 306 WP_026148689.1 hypothetical protein -
  APT55_RS13580 (LBDG_27080) - 2902341..2903261 (+) 921 WP_017288632.1 lipopolysaccharide assembly protein LapB -
  APT55_RS13585 (LBDG_27100) - 2903650..2904111 (+) 462 WP_017288631.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14101.24 Da        Isoelectric Point: 4.6436

>NTDB_id=66495 APT55_RS13570 WP_017288634.1 2901313..2901693(+) (pilH) [Leptolyngbya boryana dg5]
MSWVLVVDDSAVVRELISTELRHQGFDVAVANDGVDAISVIQKHPPDLVITDVVMPRMNGYELCRWIKSDPRSQNIPVMI
CSIKGEDFDRYWGMKQGADAYMIKPCPPAEMLSAIDYLLSRSATSN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=66495 APT55_RS13570 WP_017288634.1 2901313..2901693(+) (pilH) [Leptolyngbya boryana dg5]
ATGAGTTGGGTTTTAGTCGTGGACGATAGCGCGGTTGTGCGAGAACTCATTTCTACCGAATTGCGGCATCAAGGATTTGA
TGTTGCCGTTGCGAATGATGGTGTTGATGCCATATCCGTCATTCAAAAACATCCACCCGATCTGGTCATTACAGATGTCG
TGATGCCGCGCATGAATGGCTATGAGCTTTGCCGTTGGATCAAAAGTGATCCACGCAGCCAGAACATTCCAGTCATGATC
TGTTCGATTAAAGGTGAAGATTTCGATCGCTACTGGGGCATGAAACAAGGTGCAGATGCGTACATGATCAAACCCTGTCC
ACCTGCTGAGATGTTAAGTGCGATCGATTATTTACTGTCTCGCTCAGCCACGTCAAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

94.444

0.532
  pilG Acinetobacter baumannii strain A118

41.964

88.889

0.373
  pilL-C Synechocystis sp. PCC 6803

38.983

93.651

0.365

Multiple sequence alignment