Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG245_RS10740 Genome accession   NZ_CP108644
Coordinates   2469637..2470719 (-) Length   360 a.a.
NCBI ID   WP_371623300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464637..2475719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS10730 (OG245_10745) rcrP 2465959..2467692 (+) 1734 WP_371623298.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10735 (OG245_10750) rcrQ 2467692..2469620 (+) 1929 WP_371623299.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10740 (OG245_10755) rpoS 2469637..2470719 (-) 1083 WP_371623300.1 RNA polymerase sigma factor Regulator
  OG245_RS10745 (OG245_10760) dnaG 2470982..2472904 (-) 1923 WP_371623301.1 DNA primase -
  OG245_RS10750 (OG245_10765) - 2473032..2474291 (-) 1260 WP_371623302.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 40550.21 Da        Isoelectric Point: 6.4154

>NTDB_id=664267 OG245_RS10740 WP_371623300.1 2469637..2470719(-) (rpoS) [Streptomyces sp. NBC_01116]
MQTRTVTTTTEPIPAQNRYLHHPEATAGPPGRAPEAVMVEATHLPDPPEPRNRADSGGPTSDLFRQYLREIGRIPLLTAA
EEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGL
IRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIARELDLTPE
RVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLEDGRPRT
LEEIGRIFGVTRERIRQIESKTLKRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=664267 OG245_RS10740 WP_371623300.1 2469637..2470719(-) (rpoS) [Streptomyces sp. NBC_01116]
GTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCCCGGCGCAGAACAGGTACCTGCACCACCCGGAGGCCACCGC
CGGCCCGCCCGGACGCGCACCCGAGGCAGTCATGGTCGAAGCGACGCACCTCCCCGACCCCCCGGAGCCGCGGAACCGGG
CGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATACCGCTGCTCACCGCCGCC
GAGGAGGTCGAACTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCACCCCCGACCTCGACTC
CCGTCTCGCCGGGGACCTGGACCGGCTGGTGGTGATGGGCCGCACGGCCAAACGCCGCCTCATCGAGGCCAACCTCCGCC
TCGTCGTCTCCGTCGCCAAACGCTACGTCGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAACCTCGGACTG
ATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCAT
GTCCCGCGCGCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCATGTCGTGGAACTGATCAACCGCGTGGTGCGGG
TCCAGCGCCGCCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCCGCGAGCTCGACCTGACGCCCGAG
CGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAGCCCGTCTCCCTCCACGCCCCCGTCGGCGAGGAGGACGACGTCTCCTT
CGGCGACCTCATCGAGGACGGCGACGCCGCCTCGCCCGTCGAGTCCGCCGCCTTCCTCCTGCTGCGCGAACACCTGGAGG
CGGTGCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTGCAACTGCGGTACGGACTGGAGGACGGGCGGCCCCGCACC
CTGGAGGAGATCGGCCGGATCTTCGGCGTGACACGCGAACGTATCCGCCAGATCGAGTCCAAGACCCTCAAGCGGCTGCG
GGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(62-95)

Sigma-70 region 2 (Sigma70_r2)

(127-196)

Sigma-70 region 3 (Sigma70_r3)

(206-282)

Sigma-70, region 4 (Sigma70_r4)

(295-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.966

82.778

0.372