Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG245_RS10735 Genome accession   NZ_CP108644
Coordinates   2467692..2469620 (+) Length   642 a.a.
NCBI ID   WP_371623299.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2462692..2474620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS10720 (OG245_10735) - 2463852..2464157 (+) 306 WP_371623296.1 YtxH domain-containing protein -
  OG245_RS10725 (OG245_10740) - 2464224..2465675 (+) 1452 WP_371623297.1 FGGY family carbohydrate kinase -
  OG245_RS10730 (OG245_10745) rcrP 2465959..2467692 (+) 1734 WP_371623298.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10735 (OG245_10750) rcrQ 2467692..2469620 (+) 1929 WP_371623299.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10740 (OG245_10755) rpoS 2469637..2470719 (-) 1083 WP_371623300.1 RNA polymerase sigma factor Regulator
  OG245_RS10745 (OG245_10760) dnaG 2470982..2472904 (-) 1923 WP_371623301.1 DNA primase -
  OG245_RS10750 (OG245_10765) - 2473032..2474291 (-) 1260 WP_371623302.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69511.91 Da        Isoelectric Point: 5.0742

>NTDB_id=664266 OG245_RS10735 WP_371623299.1 2467692..2469620(+) (rcrQ) [Streptomyces sp. NBC_01116]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLRRFGREKTSLWLMLAAVTVSVALSVAGPKILGRATDLIFGGVVGRGMPEGT
TKAQAIEALREDGRGSMADMLSGVDFTPGEGIDFGAVGNVLLVALVIYVGAGLLMLVATRVSIRIINRIVFQLREDLQTK
LARLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTIPLSVVVATRVGK
RSQPQFVQQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFASGIMQPLMFFISNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQDADPEHGERPERLEGRVSLE
KVAFRYDPEKPLIEDLSLRVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDSVIDDDGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=664266 OG245_RS10735 WP_371623299.1 2467692..2469620(+) (rcrQ) [Streptomyces sp. NBC_01116]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGACTTCAAGGGGTCGAGCAAGCG
GCTGCTGAGGCGGTTCGGCCGGGAGAAGACCTCGTTGTGGCTGATGCTGGCCGCCGTGACGGTGAGCGTCGCGCTCTCGG
TGGCCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGATCTTCGGCGGTGTCGTCGGGCGCGGGATGCCCGAGGGCACG
ACGAAGGCGCAGGCGATCGAGGCACTGCGTGAGGACGGCCGCGGTTCCATGGCCGACATGCTCTCGGGGGTGGACTTCAC
CCCGGGCGAGGGCATCGACTTCGGCGCGGTGGGGAACGTCCTGCTGGTGGCGCTGGTGATCTACGTCGGTGCCGGGCTGC
TGATGCTGGTGGCGACGCGGGTGTCGATCCGGATCATCAACCGGATCGTGTTCCAGTTGCGCGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAACGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACCCTCCAGCAGACGATGGGGCAGCTCATCAACTCCCTGCTGACGATCGTCGGCGTGCTGATCATGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGATCCCGTTGTCGGTGGTCGTGGCGACGCGGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGTGACGGGGAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAAGGCCCAGTTCGCCAGCGGGATCATGCAGCCGCTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTCCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTATTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCATCGCTTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGACGCGGACCCGGAGCACGGCGAGCGCCCGGAGCGGCTGGAGGGCCGGGTCTCCCTGGAG
AAGGTGGCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGATCTGTCACTGCGTGTGGAGCCCGGGCAGACCGTCGC
GATCGTCGGTCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCGCGCTCGACGGGGTCGACGTGGCGAAGATGTCGCGGGACGAGCTGCGGTCCTCCATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCACGCGGACCGGTTCGTCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGACGGCTCCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCACGAGGAGCTGCTGGCCGCCGGGGGCGCCTATGCCCGGCTGTACGCCGCCCAGTTCGCCGAGGCGCTGGCCGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

82.243

0.361