Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG245_RS10730 Genome accession   NZ_CP108644
Coordinates   2465959..2467692 (+) Length   577 a.a.
NCBI ID   WP_371623298.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2460959..2472692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS10690 (OG245_10705) - 2461366..2461935 (+) 570 WP_371623293.1 hypothetical protein -
  OG245_RS10695 (OG245_10710) - 2461992..2462291 (+) 300 WP_371623294.1 RNase A-like domain-containing protein -
  OG245_RS10700 (OG245_10715) - 2462305..2462961 (+) 657 WP_371623295.1 contact-dependent growth inhibition system immunity protein -
  OG245_RS10720 (OG245_10735) - 2463852..2464157 (+) 306 WP_371623296.1 YtxH domain-containing protein -
  OG245_RS10725 (OG245_10740) - 2464224..2465675 (+) 1452 WP_371623297.1 FGGY family carbohydrate kinase -
  OG245_RS10730 (OG245_10745) rcrP 2465959..2467692 (+) 1734 WP_371623298.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10735 (OG245_10750) rcrQ 2467692..2469620 (+) 1929 WP_371623299.1 ABC transporter ATP-binding protein Regulator
  OG245_RS10740 (OG245_10755) rpoS 2469637..2470719 (-) 1083 WP_371623300.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62442.51 Da        Isoelectric Point: 5.1561

>NTDB_id=664265 OG245_RS10730 WP_371623298.1 2465959..2467692(+) (rcrP) [Streptomyces sp. NBC_01116]
MLIKLLRAHLGPYKKPIMLLVFLQLLQTCATLYLPSLNADIIDNGVVSGDTGYILEFGGLMIAVSVVQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVSVGLIVKRMRPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVEEVLGTESSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRAVELVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664265 OG245_RS10730 WP_371623298.1 2465959..2467692(+) (rcrP) [Streptomyces sp. NBC_01116]
GTGCTCATAAAACTCCTGCGGGCCCACCTGGGCCCGTACAAGAAACCCATCATGCTGCTGGTGTTCCTCCAGCTGCTCCA
GACCTGCGCCACGCTGTACCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCTCGGGCGATACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTCGTTCAGGTGCTCTGCAACGTGGGGGCCGTGTACTACGGGGCC
AGGACCGCCTCCGCCCTCGGGCGCGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGTGAGCTGGG
GCGTTTCGGGGCTCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGCGTCTCGGTCGGTCTGATCGTGAAGAGGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGGGACG
GGTACGAGGAGGAGCGGTTCCGGGGGGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAATCTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCGAGGAGGTCCTCGGGACCGAGTCGAGCGTCGTGCCG
CCCGTCGCGCCGGTGACGGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGCTATCCGGGCGCGGA
GGAGCCGGTGCTGCGGGCCGTGGAGCTGGTGGCCCGGCCCGGGGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGGCGAAGACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCTCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGACAGCGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTGGGCACGGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.623

100

0.4