Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   JCM16456_RS13965 Genome accession   NZ_AP014635
Coordinates   3137820..3138452 (+) Length   210 a.a.
NCBI ID   WP_068715351.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3132820..3143452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS13940 - 3132907..3134829 (+) 1923 WP_068715342.1 ABC transporter ATP-binding protein -
  JCM16456_RS13945 - 3134829..3135314 (+) 486 WP_068715344.1 TIGR02444 family protein -
  JCM16456_RS13950 - 3135360..3136337 (+) 978 WP_068715346.1 hydrolase -
  JCM16456_RS13955 - 3136407..3136616 (+) 210 WP_068715348.1 YheU family protein -
  JCM16456_RS13960 - 3136709..3137578 (+) 870 WP_068715350.1 phosphoribulokinase -
  JCM16456_RS13965 crp 3137820..3138452 (+) 633 WP_068715351.1 cAMP-activated global transcriptional regulator CRP Regulator
  JCM16456_RS13970 - 3138554..3139342 (-) 789 WP_068715353.1 DUF1338 domain-containing protein -
  JCM16456_RS13975 astD 3139405..3140862 (-) 1458 WP_068715355.1 succinylglutamate-semialdehyde dehydrogenase -
  JCM16456_RS13980 astA 3140881..3141900 (-) 1020 WP_068715357.1 arginine N-succinyltransferase -
  JCM16456_RS13985 - 3142000..3143211 (-) 1212 WP_068715359.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23579.39 Da        Isoelectric Point: 8.2772

>NTDB_id=66414 JCM16456_RS13965 WP_068715351.1 3137820..3138452(+) (crp) [Vibrio tritonius strain AM2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=66414 JCM16456_RS13965 WP_068715351.1 3137820..3138452(+) (crp) [Vibrio tritonius strain AM2]
ATGGTTCTAGGTAAACCTCAAACAGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCACAAATACCCATCAAA
AAGCACTTTGATTCATGCGGGTGAGAAGGCAGAAACGCTGTATTACATCGTAAAAGGTTCTGTTGCGGTATTGATTAAAG
ATGAAGAAGGCAAGGAGATGATCCTTTCCTATCTAAATCAGGGTGATTTTATCGGTGAACTTGGTCTTTTCGAAGAAGGT
CAAGAACGTAGCGCCTGGGTTCGAGCAAAATCTCCATGTGAAGTAGCTGAGATTTCATTTAAGAAATTCCGTCAGCTAAT
TCAAGTTAACCCAGACATTCTAATGCGTCTTTCTGGTCAAATGGCACGTCGCCTACAAGTGACTAGCCAAAAAGTGGGCG
ATTTAGCCTTCCTTGACGTAACTGGTCGTATTGCTCAGACTCTTTTGAATCTAGCAAAACAACCTGATGCAATGACTCAC
CCAGACGGTATGCAAATTAAAATTACCCGTCAGGAGATTGGTCAAATCGTTGGTTGTTCACGCGAAACGGTTGGTCGTAT
TCTTAAGATGCTTGAAGAACAAAACCTTATTTCTGCACACGGCAAAACTATCGTCGTGTACGGCACCCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75.98

97.143

0.738
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment