Detailed information NTG0663709

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MNO08_RS03875
• Genome accession: NZ_CP093333
• Coordinates: 863134..864000 (-)
• Length: 288 a.a.
• NCBI ID: WP_047541162.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain H4-B59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 858134..869000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MNO08_RS03835 (MNO08_03835)	-	858556..859854 (-)	1299	WP_010213244.1	NAD(P)/FAD-dependent oxidoreductase	-
MNO08_RS03840 (MNO08_03840)	-	859915..860088 (-)	174	WP_010213243.1	DUF3094 family protein	-
MNO08_RS03845 (MNO08_03845)	-	860143..860772 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
MNO08_RS03850 (MNO08_03850)	-	860876..861343 (+)	468	WP_010213240.1	hypothetical protein	-
MNO08_RS03855 (MNO08_03855)	-	861340..862029 (+)	690	WP_010213238.1	energy-coupling factor ABC transporter permease	-
MNO08_RS03860 (MNO08_03860)	-	862105..862320 (+)	216	WP_003171680.1	hypothetical protein	-
MNO08_RS03865 (MNO08_03865)	yacG	862317..862517 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
MNO08_RS03870 (MNO08_03870)	coaE	862514..863137 (-)	624	WP_010213235.1	dephospho-CoA kinase	-
MNO08_RS03875 (MNO08_03875)	pilD	863134..864000 (-)	867	WP_047541162.1	A24 family peptidase	Machinery gene
MNO08_RS03880 (MNO08_03880)	pilC	863997..865205 (-)	1209	WP_047541163.1	type II secretion system F family protein	Machinery gene
MNO08_RS03885 (MNO08_03885)	-	865399..865821 (+)	423	WP_187517330.1	pilin	-
MNO08_RS03890 (MNO08_03890)	-	865857..867257 (+)	1401	WP_187517331.1	O-antigen ligase family protein	-
MNO08_RS03900 (MNO08_03900)	-	867524..867829 (+)	306	WP_010213230.1	DUF6388 family protein	-
MNO08_RS03905 (MNO08_03905)	nadC	867877..868725 (-)	849	WP_010213228.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31668.84 Da
• Isoelectric Point: 7.9976

>NTDB_id=663709 MNO08_RS03875 WP_047541162.1 863134..864000(-) (pilD) [Pseudomonas simiae strain H4-B59]
MSLLLAGHPWAFVALASLLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGMPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISPRYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=663709 MNO08_RS03875 WP_047541162.1 863134..864000(-) (pilD) [Pseudomonas simiae strain H4-B59]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGTCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCATGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCCCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCAGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.122	96.875	0.524
pilD	Vibrio campbellii strain DS40M4	50	97.222	0.486
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter nosocomialis M2	49.451	94.792	0.469
pilD	Acinetobacter baumannii D1279779	49.084	94.792	0.465