Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MNQ95_RS03185 Genome accession   NZ_CP093331
Coordinates   679590..680990 (+) Length   466 a.a.
NCBI ID   WP_241953780.1    Uniprot ID   -
Organism   Pseudoxanthomonas daejeonensis strain S9-A64R     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 674590..685990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ95_RS03170 (MNQ95_03170) sucD 675585..676460 (-) 876 WP_162411558.1 succinate--CoA ligase subunit alpha -
  MNQ95_RS03175 (MNQ95_03175) sucC 676546..677709 (-) 1164 WP_162411557.1 ADP-forming succinate--CoA ligase subunit beta -
  MNQ95_RS03180 (MNQ95_03180) - 677942..679540 (+) 1599 WP_241953779.1 ATP-binding protein -
  MNQ95_RS03185 (MNQ95_03185) pilR 679590..680990 (+) 1401 WP_241953780.1 sigma-54 dependent transcriptional regulator Regulator
  MNQ95_RS03190 (MNQ95_03190) rsmA 681158..681940 (+) 783 WP_241953781.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  MNQ95_RS03195 (MNQ95_03195) apaG 682271..682654 (+) 384 WP_162411553.1 Co2+/Mg2+ efflux protein ApaG -
  MNQ95_RS03200 (MNQ95_03200) - 682665..683516 (+) 852 WP_241953782.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  MNQ95_RS03205 (MNQ95_03205) - 683576..684073 (-) 498 WP_241953783.1 dihydrofolate reductase -
  MNQ95_RS03210 (MNQ95_03210) - 684079..684873 (-) 795 WP_241953784.1 thymidylate synthase -
  MNQ95_RS03215 (MNQ95_03215) lgt 684870..685760 (-) 891 WP_241953785.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50077.34 Da        Isoelectric Point: 6.1316

>NTDB_id=663671 MNQ95_RS03185 WP_241953780.1 679590..680990(+) (pilR) [Pseudoxanthomonas daejeonensis strain S9-A64R]
MSPGRSALIVDDERDIRELLVLTLGRMGLRVDTAANLSEARELLGNNRYDLCFTDMRLPDGSGIELVGEISRNHPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDINVLRGLVRHALELNNTERPKPPPTPPEQASRLLGESTAMATLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARGAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRAVGAAGEVPVDVRILSATHKDLGQLVADGRFRHDLYYRINVIELRVPPLRERTGDLP
QLASAILQRLAAGQGRDAIALTPAAMDALAGYAFPGNVRELENVLERALALAEGDSIDTSDLHLPQAITRSGSPSDPANP
AQAVQAEAVLDLDPGTGALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=663671 MNQ95_RS03185 WP_241953780.1 679590..680990(+) (pilR) [Pseudoxanthomonas daejeonensis strain S9-A64R]
ATGAGCCCTGGCCGCAGTGCATTGATCGTCGACGACGAGCGCGATATCCGCGAATTGCTGGTACTGACGCTGGGTCGCAT
GGGGTTGCGGGTCGATACCGCAGCCAACCTTTCCGAAGCCCGCGAACTGCTGGGCAACAACCGCTACGACCTGTGCTTCA
CCGACATGCGCCTGCCCGACGGCAGCGGCATCGAACTGGTGGGCGAGATCTCGCGCAACCATCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAAGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAACGTCCTGCGCGGCCTGGTCCGCCATGCGCTGGAACTGAACAACACCGAGCGGCCCAAGCCGCCGCCAACCC
CGCCCGAGCAGGCCAGCCGCCTGCTCGGCGAGTCCACCGCGATGGCCACCCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCCCCGGTCTACATCCTGGGCGAGTCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAGGGCGC
GCGTGGCGCGGGGCCGTTCATCCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCAGCCAGTGGCGGCACCCTTTTCCTCGAC
GAAGTCGCCGAGCTGCCCCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCGCGGTCGGTGC
CGCCGGCGAAGTGCCGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTCGGCCAGCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTCTACTACCGCATCAACGTGATCGAGCTGCGCGTTCCGCCTTTGCGCGAGCGCACCGGCGACCTGCCG
CAGCTGGCCAGCGCGATCCTGCAGCGCCTGGCCGCCGGGCAGGGACGCGACGCGATCGCACTCACCCCCGCGGCGATGGA
CGCGCTGGCCGGCTATGCCTTCCCCGGCAACGTGCGCGAGCTGGAGAACGTGCTCGAGCGCGCCCTGGCCCTGGCCGAAG
GCGACAGCATCGACACGTCCGACCTGCACCTGCCACAGGCCATCACCCGCAGCGGCTCGCCGTCGGACCCTGCAAACCCG
GCCCAGGCCGTGCAGGCCGAAGCGGTCCTGGACCTGGACCCGGGCACCGGCGCCCTGCCCTCGTACATCGAACAGCTCGA
GCGCGCCGCGATCCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGGACCGCCGCGCAGCTGGGCATCACCTTCC
GCGCGCTGCGCTACAAGCTCAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.554

99.142

0.62
  pilR Acinetobacter baumannii strain A118

49.785

100

0.498
  luxO Vibrio cholerae strain A1552

36.761

98.069

0.361