Detailed information NTG0663523

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N023_RS03565
• Genome accession: NZ_CP093321
• Coordinates: 818199..819536 (-)
• Length: 445 a.a.
• NCBI ID: WP_003344575.1
• Uniprot ID: A0A3M4Y9G0
• Organism: Pseudomonas syringae CC440
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 813199..824536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N023_RS03550 (N023_03550)	-	813321..816524 (+)	3204	WP_024664669.1	PilC/PilY family type IV pilus protein	-
N023_RS03555 (N023_03555)	-	816536..816943 (+)	408	WP_003392819.1	type IV pilin protein	-
N023_RS03560 (N023_03560)	thiO	816969..818072 (+)	1104	WP_024664668.1	glycine oxidase ThiO	-
N023_RS03565 (N023_03565)	pilR	818199..819536 (-)	1338	WP_003344575.1	sigma-54 dependent transcriptional regulator	Regulator
N023_RS03570 (N023_03570)	pilS	819539..821131 (-)	1593	WP_024664667.1	ATP-binding protein	Regulator
N023_RS03575 (N023_03575)	-	821121..821360 (-)	240	WP_032607804.1	PP0621 family protein	-
N023_RS03580 (N023_03580)	-	821480..822502 (-)	1023	WP_003344571.1	outer membrane protein assembly factor BamD	-
N023_RS03585 (N023_03585)	rluD	822652..823614 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N023_RS03590 (N023_03590)	pgeF	823611..824339 (+)	729	WP_024664666.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49669.60 Da
• Isoelectric Point: 6.2986

>NTDB_id=663523 N023_RS03565 WP_003344575.1 818199..819536(-) (pilR) [Pseudomonas syringae CC440]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=663523 N023_RS03565 WP_003344575.1 818199..819536(-) (pilR) [Pseudomonas syringae CC440]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGTAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATCCCGGTGAATTGCGGCGCCATCCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTACGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCAGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

3D structure

• AlphaFold DB: A0A3M4Y9G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.201	99.551	0.769
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375