Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG770_RS28660 Genome accession   NZ_CP108587
Coordinates   6404813..6406933 (+) Length   706 a.a.
NCBI ID   WP_329227588.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6399813..6411933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG770_RS28635 (OG770_28585) - 6400169..6401047 (-) 879 WP_405698120.1 carbohydrate kinase family protein -
  OG770_RS28640 (OG770_28590) - 6401119..6402015 (-) 897 WP_405698122.1 pseudouridine-5'-phosphate glycosidase -
  OG770_RS28645 (OG770_28595) - 6402221..6402766 (-) 546 WP_329227594.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG770_RS28650 (OG770_28600) - 6402811..6403686 (-) 876 WP_405695704.1 glycerophosphodiester phosphodiesterase -
  OG770_RS28655 (OG770_28605) - 6403901..6404773 (+) 873 WP_405695705.1 MHYT domain-containing protein -
  OG770_RS28660 (OG770_28610) uvrB 6404813..6406933 (+) 2121 WP_329227588.1 excinuclease ABC subunit UvrB Machinery gene
  OG770_RS28665 (OG770_28615) - 6407065..6407643 (+) 579 WP_104789925.1 TerD family protein -
  OG770_RS28670 (OG770_28620) - 6407768..6409717 (+) 1950 WP_405695707.1 TerD family protein -
  OG770_RS28675 (OG770_28625) - 6409984..6410979 (+) 996 WP_329227583.1 TerC family protein -
  OG770_RS28680 (OG770_28630) - 6411045..6411701 (-) 657 WP_405695708.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 79231.96 Da        Isoelectric Point: 4.9070

>NTDB_id=663523 OG770_RS28660 WP_329227588.1 6404813..6406933(+) (uvrB) [Streptomyces sp. NBC_01185]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIAELDRRVRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGDEVDRDQLLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDSSLHVFPASHYVAGPERMEKAVTGIEQELGQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRLPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKINDIVASIAREEVDTEQLLGTGYRQSKETKAPVPSLGGKAA
PGGKAKKGAPVVTDRPAAELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=663523 OG770_RS28660 WP_329227588.1 6404813..6406933(+) (uvrB) [Streptomyces sp. NBC_01185]
ATGCGGCCAGTCTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGTGACCAGCC
CGCGGCCATCGCCGAGCTGGACCGGCGCGTGCGCGCGGGGGAGAAGGACGTCGTGCTGCTCGGCGCGACCGGCACGGGCA
AGTCGGCGACGACGGCCTGGATGATCGAGAAGCTGCAGCGGCCCACCCTCGTCATGGCACCGAACAAGACGCTCGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTCCGGCACT
CCGCCACCAACTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGACGAGGTCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATCCAGTACACCCGCAACGACCTCGCTTTCACCCGCGGCACGTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGGATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCGACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACTCCTCGCTCCACGTCTTCCCCGCCAGCCACTACGTGGCGGGTCCCGAGCGCATGGAGAAGGC
GGTCACCGGCATCGAGCAGGAGCTGGGACAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCAGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCACCGCCCCGAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCCTGGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTTCCCTCCGCCCTGGACAACCGGCCACTGAAGTGGGAGGAGTTCCTGGGCCGGATCAACCAGACGGTCTACCTC
TCCGCCACACCCGGCAAGTACGAGCTGTCCCGGGGCGACGGGTTCGTCGAACAGATCATCCGGCCCACCGGGCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACGGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCGAGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACACTGCGCCGCATCGAGCTCCTGCGTGAGCTGCGCTCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTGCGGGAGGGCCTCGACCTGCCCGAGGTGTCGCTGGTGGCCATCCTCGACGCGGACAAGCAGG
GCTTCCTGCGCTCCGGCACGTCACTGATCCAGACCATCGGCCGTGCCGCCCGTAACGTCTCGGGACAGGTCCACATGTAC
GCCGACAAGGTCACCCCCGCGATGGCGCAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAC
GGAGCGCGGGGTCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGTCCATCGCGCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCACCGGCTACCGGCAGTCCAAGGAGACCAAGGCGCCCGTCCCCTCGCTGGGGGGCAAGGCCGCC
CCGGGGGGCAAGGCGAAGAAGGGCGCCCCGGTGGTCACCGACCGGCCCGCCGCGGAGCTCGCGGGGATCATCGAGGAGAT
GACGGACCGCATGCGCGCCGCCGCCGCCGACCTGCAGTTCGAGGTGGCCGCCCGGCTGCGCGACGAGGTGGGCGAGCTGA
AGAAGGAGCTGCGTCAGATGAGGGAAGCGGGGCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(664-696)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(168-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.496

97.025

0.548
  uvrB Streptococcus pneumoniae R6

56.496

97.025

0.548
  uvrB Streptococcus pneumoniae D39

56.496

97.025

0.548