Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AS4_RS01465 Genome accession   NZ_AP014630
Coordinates   315705..317120 (-) Length   471 a.a.
NCBI ID   WP_096732720.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 310705..322120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS01450 (AS4_02830) lptG 311519..312589 (+) 1071 WP_004818556.1 LPS export ABC transporter permease LptG -
  AS4_RS01455 (AS4_02840) gpmI 312744..314291 (+) 1548 WP_034613550.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AS4_RS01460 (AS4_02850) - 314322..315500 (+) 1179 WP_004818558.1 S41 family peptidase -
  AS4_RS01465 (AS4_02860) pilR 315705..317120 (-) 1416 WP_096732720.1 sigma-54 dependent transcriptional regulator Regulator
  AS4_RS01470 (AS4_02870) pilS 317138..318706 (-) 1569 WP_096732722.1 PAS domain-containing sensor histidine kinase Regulator
  AS4_RS01475 (AS4_02880) - 318743..319378 (-) 636 WP_004718392.1 response regulator -
  AS4_RS01480 (AS4_02890) pbpG 319611..320666 (+) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AS4_RS01485 (AS4_02900) - 320837..321466 (+) 630 WP_096732724.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53297.41 Da        Isoelectric Point: 6.4577

>NTDB_id=66351 AS4_RS01465 WP_096732720.1 315705..317120(-) (pilR) [Acinetobacter guillouiae strain NBRC 110550]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLRETISDTPLEESMLIGDSQVIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFVAINCGAISEELMESELFGHKKGCFSGATQDKQGLIQAANGGTLFLDE
IAELSLAMQAKLLRALQEKKIRPLGSDSEIEVDFRIISATHQDIEAFVEQGKFRHDLFFRIHVMDIVLPPLRERDCDILI
LANHFLQQICTEWRISTKSFTEQAKAFLLQQHYSGNVRELRNIIEKAITMSDEDYIDIQQLQPAPHRGVHKVESPDLMQS
KALPIVMPNKAQNIPEEGLEQYLEKVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=66351 AS4_RS01465 WP_096732720.1 315705..317120(-) (pilR) [Acinetobacter guillouiae strain NBRC 110550]
ATGACTACACGACAACCATTGGTTTTACTTGTAGATGATGAACAAGATTTATGTATGTTAATGCAAATGAGCCTTTCTCG
GATGGGCATCAAAACGCATATGGCACACCATTTACAACAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACCGATTTAAACCTCCCTGATGGTAGTGGTTTAGATTTGGTTAAACATGTATCGCAGCACTATCCTAAAACGCCTATT
GCGGTCTTAACTGCATATGGCAATATGGAAATTGCGATTGCCTCGCTGAAAGCAGGCGCTTTTGATTTTGTCAGCAAACC
GATTAACCAGTTACATCTGCAACAGCTTTTACAAAAAGCCTTGCATGTACCGCAGTTAAGAGAAACGATCAGCGATACAC
CGCTTGAAGAATCAATGCTCATCGGTGATTCACAGGTGATTCGTAAGTTAAGAGAATCGATTAAAAAAATTGCCCGTTCA
CAAGCTCCCGTATTTATCACGGGTGAATCTGGAACAGGCAAAGAGGTTGTTGCCAACCTCATCCATCTACTCAGCAACCG
CAGTGATAGCCCTTTTGTTGCGATTAATTGTGGTGCAATTTCTGAAGAGTTGATGGAGAGTGAGCTATTTGGGCATAAAA
AAGGTTGCTTTTCAGGTGCAACTCAAGACAAACAGGGTCTTATTCAAGCTGCCAATGGTGGTACCCTGTTTTTAGATGAA
ATTGCAGAACTGTCATTGGCGATGCAAGCCAAACTGTTACGAGCATTGCAAGAAAAGAAAATTCGTCCTCTAGGCAGTGA
TAGCGAAATCGAAGTTGATTTTCGTATTATCAGTGCAACACATCAAGACATTGAAGCATTCGTTGAACAAGGCAAATTCC
GCCATGATCTGTTCTTTAGAATTCATGTGATGGATATTGTCCTGCCGCCATTGCGCGAACGTGATTGTGATATTCTAATT
TTAGCCAATCATTTTCTTCAGCAAATTTGTACAGAGTGGCGTATTTCAACCAAGTCTTTCACTGAACAAGCCAAAGCTTT
TCTTTTGCAACAACATTACTCAGGCAATGTTCGTGAATTACGCAATATCATTGAAAAAGCCATTACCATGAGTGATGAAG
ACTATATTGATATTCAACAGCTACAACCAGCTCCACATCGTGGTGTCCACAAAGTCGAATCGCCTGATCTGATGCAAAGT
AAAGCCTTGCCTATCGTCATGCCGAATAAAGCACAAAACATTCCAGAAGAAGGATTGGAGCAATATTTGGAAAAAGTCGA
AAAAGAAGTGCTGTTATCTGCATTAAATCAAACCCATTGGAATCGCACTTTAGCTGCGAAGAAATTGGGCATGACCTTTC
GTTCTTTACGTTACCGTTTGAAAAAGTTTGGTTTAGATACCGATGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

69.002

100

0.69
  pilR Pseudomonas aeruginosa PAK

47.391

97.665

0.463

Multiple sequence alignment