Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AS4_RS01470 Genome accession   NZ_AP014630
Coordinates   317138..318706 (-) Length   522 a.a.
NCBI ID   WP_096732722.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain NBRC 110550     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 312138..323706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS4_RS01455 (AS4_02840) gpmI 312744..314291 (+) 1548 WP_034613550.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AS4_RS01460 (AS4_02850) - 314322..315500 (+) 1179 WP_004818558.1 S41 family peptidase -
  AS4_RS01465 (AS4_02860) pilR 315705..317120 (-) 1416 WP_096732720.1 sigma-54 dependent transcriptional regulator Regulator
  AS4_RS01470 (AS4_02870) pilS 317138..318706 (-) 1569 WP_096732722.1 PAS domain-containing sensor histidine kinase Regulator
  AS4_RS01475 (AS4_02880) - 318743..319378 (-) 636 WP_004718392.1 response regulator -
  AS4_RS01480 (AS4_02890) pbpG 319611..320666 (+) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AS4_RS01485 (AS4_02900) - 320837..321466 (+) 630 WP_096732724.1 DUF6915 family protein -
  AS4_RS01490 (AS4_02910) - 321476..322249 (+) 774 WP_096732726.1 hypothetical protein -
  AS4_RS01495 (AS4_02920) thrC 322314..323453 (-) 1140 WP_096732728.1 threonine synthase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59657.26 Da        Isoelectric Point: 6.7320

>NTDB_id=66352 AS4_RS01470 WP_096732722.1 317138..318706(-) (pilS) [Acinetobacter guillouiae strain NBRC 110550]
MSPTVTVPIYQTIYRLGTLYSGYRLVIAFCLVIIFLITLEHQPVHYQYPSLYFYSLTAFTLIAALQMMLLKFYPHGVGRQ
FIGFFIVDIPFLSTLVFALNGPNLAISILFVIAVFTANFLLSKNKALFVTLVSVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACLLLGISPLYAHE
QYHLSSFQPDLYEILKDAMLRDGERFQFESHQSSYTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFISSDREQQTILNQMITKQTIRINNIIKDTLDMAKNKKTHTSKINFQEFVDDLLRHDLGDAQ
EKIKLEVQSDVWIYFDDSHLRQVLINLVRNALRHNDQNAEHILVQTFKNESHVYINVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPLMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=66352 AS4_RS01470 WP_096732722.1 317138..318706(-) (pilS) [Acinetobacter guillouiae strain NBRC 110550]
ATGTCGCCTACGGTAACGGTTCCCATTTATCAAACAATTTACCGTCTAGGCACACTGTATTCAGGATATAGATTGGTTAT
TGCCTTTTGCTTAGTCATTATTTTTCTGATTACCCTTGAACATCAACCCGTACATTACCAATATCCCAGCTTATATTTTT
ATTCTCTAACTGCATTTACGCTGATTGCAGCATTACAAATGATGCTGCTCAAGTTCTACCCACATGGTGTTGGACGACAA
TTTATTGGTTTTTTTATTGTTGATATTCCCTTTCTAAGTACCTTGGTATTTGCCCTTAATGGGCCAAATTTAGCCATCAG
TATTTTGTTCGTGATTGCCGTTTTTACCGCGAATTTTCTGCTCAGTAAAAATAAAGCACTATTCGTAACACTGGTTTCTG
TGATTGCGATTATTTACCAACAGTTTTTAGGCAGCTTCTTCGATTTTTCAAATTTAAATAATATTAGTAACAGTGCCTTA
TTGGCTTTTTTATTTTTTATGGTCTATGGCATTGGACAGATTGCAATTAATCGCTTCCAAGTTTTGGAGTCGTTAAATAC
CTATCAATCGCTTGAATTATTTAAGTTACAGAACATTAACCGCTATATTTTAGAACAGATTGAAGTGGGTTATTTGGTGC
TCGATGAAAAGTGCAAAATTATTGTCAGTAACCCTGCCGCCTGTTTGCTTTTGGGTATTTCACCACTTTACGCACATGAG
CAATATCATTTATCCAGCTTTCAACCGGACTTATATGAAATCTTAAAAGATGCCATGTTACGTGATGGCGAACGCTTCCA
ATTTGAATCGCATCAATCCTCGTATACAGTCGATATTCGCGTACAAAAATTGATTGTTCCGCATCAAGCACTCACGCTTT
TGGTCCTCGAAGATGCACAAAAAATTAATCAAAAGGTACAACAACTCAAACTTGCTGCACTTGGTCAATTGTCCGCCAGT
ATTGCCCATGAAATTCGCAATCCACTTGCTGCCATTGCGCAGGCCAATGATCTCTTTATTAGCAGTGACCGAGAACAACA
AACCATTTTAAATCAAATGATTACCAAACAAACCATCCGTATCAATAATATTATTAAAGATACCTTGGATATGGCAAAAA
ATAAAAAGACCCATACATCGAAAATTAATTTTCAAGAATTTGTTGATGACTTATTACGCCATGATTTAGGGGATGCTCAG
GAAAAAATCAAATTAGAGGTCCAATCTGATGTTTGGATTTATTTTGATGATTCTCATCTTCGACAAGTTTTAATCAATTT
AGTCCGTAATGCATTACGTCATAATGATCAAAATGCTGAACACATTTTAGTGCAAACGTTTAAAAATGAATCACACGTAT
ATATCAATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCGCAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAGACGATATGCGAAGCGAATCAAGCGAAACTAATTTACGTAGAGCA
AAAACAACAAGGGGCGTGCTTCCGTATCGAATGCCCACTCATGGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.398

98.084

0.573

Multiple sequence alignment