Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PST29_RS09030 Genome accession   NZ_AP014628
Coordinates   1986907..1989123 (+) Length   738 a.a.
NCBI ID   WP_060842851.1    Uniprot ID   A0AAD1F1Z3
Organism   Pseudomonas sp. St29     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1981907..1994123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS09005 (PST29_1821) - 1983033..1983692 (+) 660 WP_060842849.1 transglutaminase family protein -
  PST29_RS09010 (PST29_1822) - 1983735..1984358 (+) 624 WP_060838222.1 glutathione S-transferase -
  PST29_RS09015 (PST29_1823) - 1984490..1985422 (+) 933 WP_060838223.1 ABC transporter ATP-binding protein -
  PST29_RS09020 (PST29_1824) - 1985419..1986198 (+) 780 WP_060838224.1 ABC transporter permease -
  PST29_RS09025 (PST29_1825) - 1986252..1986767 (-) 516 WP_060842850.1 DUF2062 domain-containing protein -
  PST29_RS09030 (PST29_1826) comA 1986907..1989123 (+) 2217 WP_060842851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PST29_RS09035 (PST29_1827) exbB 1989241..1989876 (+) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PST29_RS09040 (PST29_1828) - 1989873..1990301 (+) 429 WP_060842852.1 biopolymer transporter ExbD -
  PST29_RS09045 (PST29_1829) lpxK 1990301..1991311 (+) 1011 WP_060838228.1 tetraacyldisaccharide 4'-kinase -
  PST29_RS09050 (PST29_1830) - 1991335..1991520 (+) 186 WP_011060103.1 Trm112 family protein -
  PST29_RS09055 (PST29_1831) kdsB 1991517..1992281 (+) 765 WP_060842853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PST29_RS09060 (PST29_1832) - 1992281..1992745 (+) 465 WP_060842854.1 low molecular weight protein-tyrosine-phosphatase -
  PST29_RS09065 (PST29_1833) murB 1992742..1993761 (+) 1020 WP_060842855.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80784.06 Da        Isoelectric Point: 11.5665

>NTDB_id=66328 PST29_RS09030 WP_060842851.1 1986907..1989123(+) (comA) [Pseudomonas sp. St29]
MGTGLLALAAGLLALGFLPVLPPVWLLLALAVVGLMLLPFRTHPVAFFLFGFAWACVSGHWALNDRLAPGLEGQTRWLEG
QVSGLPEQGQGVVRFELQGAQARRERLPRRIRLAWHDAPPLHSGERWRLAVTLRRPAGLLNVQGFDHQAWLLARRIGATG
TVKAGQLLRPARLAWREGLRQHLLGVEAQGRGAGLAALVMGDGSGLTRQDWQVLQDTGTVHLMVISGQHISLLAGVIYLG
VAGLARWGIWPERRPWLPWACALAFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGVWRPWLLALNAVLLFEPL
ASLQPGFWLSFAAVAILLLTFAGRLGRWRWWQAWSRAQWLIAIGLLPPLLALGLPISFSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPHVGEGLLWLAGGLLDGLFRLLGMIAGAWPAWVAPLLPWWLWGLSALGALLLLLPSGVPLRVLGWPLLLLAI
WPPEQVLPEGEVEVWQLDVGQGLSMLLRTRDHAMLYDAGARVGDFDLGERVVLPSLRKLGIRQLDLMLLSHADNDHAGGA
LAVWRGIDVARVRSGEPGALPDALQAQPCESGLGWQWNGVRFRLWQWPAAADGNQASCVLQVEARGERLLLTGDIDVHAE
RALLASPLAVHTHWLQAPHHGSRTSSSMALLQRLRPTAVLISRGRGNAFGHPHAEVLARYRRLGVAVHDSADQGALKLRL
GTFGPVQSLRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=66328 PST29_RS09030 WP_060842851.1 1986907..1989123(+) (comA) [Pseudomonas sp. St29]
ATGGGGACGGGGTTGCTGGCACTGGCCGCGGGGCTGCTGGCGCTGGGTTTTCTACCGGTGTTGCCGCCGGTCTGGCTGTT
GCTGGCGTTGGCGGTCGTGGGGCTGATGCTGCTGCCGTTTCGTACACATCCAGTGGCATTTTTTCTCTTCGGTTTCGCCT
GGGCTTGCGTTTCCGGGCATTGGGCCCTGAATGATCGCCTGGCTCCTGGCCTGGAAGGACAGACCCGCTGGCTGGAGGGG
CAGGTCAGTGGTTTGCCGGAGCAGGGCCAGGGCGTGGTGCGCTTTGAGCTGCAGGGTGCCCAGGCGCGACGCGAGCGCCT
GCCGCGGCGGATACGCCTGGCCTGGCACGACGCCCCGCCGCTGCACAGTGGCGAGCGCTGGCGCCTGGCGGTCACGTTGC
GGCGTCCTGCCGGGCTGCTCAATGTCCAGGGGTTCGATCACCAGGCCTGGCTGCTGGCGCGGCGCATCGGGGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTCAGGCCCGCCCGCCTGGCCTGGCGCGAGGGGCTGCGCCAGCACCTGCTGGGTGTCGA
GGCACAAGGGCGTGGCGCCGGGCTGGCGGCACTGGTGATGGGCGACGGCTCGGGGCTGACGCGCCAGGACTGGCAGGTGC
TGCAGGACACCGGCACGGTTCACCTGATGGTGATTTCCGGTCAGCACATCAGCCTGCTGGCCGGGGTGATCTACCTCGGG
GTGGCCGGGCTCGCCCGCTGGGGCATCTGGCCCGAGCGCCGGCCATGGCTGCCCTGGGCCTGTGCCCTGGCCTTTCTCGG
GGCTCTGGGCTACGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCAACGGGCTTGCGTGATGGTCGCCCTGGTCCTGCTCT
GGCGGCTGCGCTTTCGCCATCTGGGCGTCTGGCGACCCTGGTTGCTGGCGTTGAATGCGGTGTTGCTGTTCGAGCCTCTG
GCCAGTCTGCAGCCGGGATTCTGGCTGTCCTTTGCCGCGGTGGCGATCCTGCTTCTTACCTTCGCCGGGCGCCTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGTGCGCAGTGGCTGATCGCCATTGGCTTGCTGCCGCCGCTGCTGGCCCTGGGGT
TGCCCATCAGTTTCAGCGGTCCCCTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTCTGCTGGTGCTGCCGCCGGCCCTG
CTGGGTTGTCTGTTGCTGCCGGTGCCACATGTGGGCGAGGGGTTGCTGTGGCTGGCCGGGGGGCTGCTGGATGGGCTGTT
CCGCCTGTTGGGGATGATCGCCGGTGCCTGGCCGGCCTGGGTGGCGCCGTTGCTGCCCTGGTGGCTTTGGGGGCTCAGTG
CCCTGGGGGCCTTGCTGTTGCTCCTGCCCAGCGGTGTACCGCTGCGGGTGCTGGGGTGGCCGCTGTTGCTATTGGCCATC
TGGCCGCCCGAGCAAGTGCTGCCCGAGGGTGAGGTGGAGGTCTGGCAACTGGACGTGGGGCAGGGGCTGTCGATGCTCCT
GCGCACCCGCGATCACGCCATGCTCTACGATGCCGGCGCCCGGGTGGGGGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCAGCTTGCGCAAGCTGGGGATCAGGCAGCTGGACCTGATGCTGCTCAGTCATGCCGACAATGATCATGCCGGTGGCGCC
CTGGCGGTCTGGCGCGGAATCGATGTGGCCCGGGTGCGCAGCGGCGAGCCCGGGGCATTGCCCGACGCCCTGCAAGCACA
GCCTTGCGAGTCGGGCCTGGGCTGGCAATGGAATGGGGTGCGCTTTCGGCTGTGGCAATGGCCGGCGGCGGCCGATGGCA
ACCAGGCTTCCTGCGTGTTGCAGGTCGAGGCTCGGGGCGAGCGGCTGTTGCTCACCGGCGACATCGACGTGCATGCCGAA
CGGGCATTGCTCGCCAGTCCGCTGGCGGTTCACACCCACTGGTTGCAGGCCCCCCATCATGGCAGTCGCACTTCTTCGTC
CATGGCCCTGCTGCAACGCCTGCGACCGACCGCGGTGCTGATTTCCCGCGGGCGGGGCAATGCCTTCGGTCATCCCCACG
CCGAGGTACTGGCGCGCTATCGACGGCTGGGGGTGGCTGTGCATGACAGCGCCGATCAAGGAGCGCTGAAACTGCGCCTG
GGGACTTTCGGGCCCGTGCAAAGCCTGCGCGCGCAGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.585

96.748

0.615
  comA Ralstonia pseudosolanacearum GMI1000

32.734

100

0.37

Multiple sequence alignment