Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PST29_RS09035 Genome accession   NZ_AP014628
Coordinates   1989241..1989876 (+) Length   211 a.a.
NCBI ID   WP_016968261.1    Uniprot ID   A0AAD1B7L4
Organism   Pseudomonas sp. St29     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1984241..1994876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS09015 (PST29_1823) - 1984490..1985422 (+) 933 WP_060838223.1 ABC transporter ATP-binding protein -
  PST29_RS09020 (PST29_1824) - 1985419..1986198 (+) 780 WP_060838224.1 ABC transporter permease -
  PST29_RS09025 (PST29_1825) - 1986252..1986767 (-) 516 WP_060842850.1 DUF2062 domain-containing protein -
  PST29_RS09030 (PST29_1826) comA 1986907..1989123 (+) 2217 WP_060842851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PST29_RS09035 (PST29_1827) exbB 1989241..1989876 (+) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PST29_RS09040 (PST29_1828) - 1989873..1990301 (+) 429 WP_060842852.1 biopolymer transporter ExbD -
  PST29_RS09045 (PST29_1829) lpxK 1990301..1991311 (+) 1011 WP_060838228.1 tetraacyldisaccharide 4'-kinase -
  PST29_RS09050 (PST29_1830) - 1991335..1991520 (+) 186 WP_011060103.1 Trm112 family protein -
  PST29_RS09055 (PST29_1831) kdsB 1991517..1992281 (+) 765 WP_060842853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PST29_RS09060 (PST29_1832) - 1992281..1992745 (+) 465 WP_060842854.1 low molecular weight protein-tyrosine-phosphatase -
  PST29_RS09065 (PST29_1833) murB 1992742..1993761 (+) 1020 WP_060842855.1 UDP-N-acetylmuramate dehydrogenase -
  PST29_RS09070 (PST29_1834) - 1994013..1994483 (+) 471 WP_016968267.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23019.19 Da        Isoelectric Point: 7.4247

>NTDB_id=66329 PST29_RS09035 WP_016968261.1 1989241..1989876(+) (exbB) [Pseudomonas sp. St29]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=66329 PST29_RS09035 WP_016968261.1 1989241..1989876(+) (exbB) [Pseudomonas sp. St29]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATTGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGGGTCACCCCGCCCCATCTGTTGGGTCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGAACAAGGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCCCTGGGGGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAGGCGGCGGCCCGCGTGATCCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTTTTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCACGTGCTGGCCGGCGGTATTTCCAAGGCCTTGATCACCACTGCC
GCGGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGTCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGCGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment