Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG702_RS27650 Genome accession   NZ_CP108568
Coordinates   6214606..6216699 (+) Length   697 a.a.
NCBI ID   WP_327291652.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6209606..6221699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG702_RS27625 (OG702_27655) - 6210702..6211640 (+) 939 WP_327291647.1 PAC2 family protein -
  OG702_RS27630 (OG702_27660) coaE 6211679..6212305 (+) 627 WP_327291648.1 dephospho-CoA kinase -
  OG702_RS27635 (OG702_27665) - 6212418..6212780 (+) 363 WP_327291649.1 tetratricopeptide repeat protein -
  OG702_RS27640 (OG702_27670) - 6213007..6213942 (+) 936 WP_327291650.1 slipin family protein -
  OG702_RS27645 (OG702_27675) - 6213988..6214515 (-) 528 WP_327291651.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG702_RS27650 (OG702_27680) uvrB 6214606..6216699 (+) 2094 WP_327291652.1 excinuclease ABC subunit UvrB Machinery gene
  OG702_RS27655 (OG702_27685) - 6216809..6217387 (+) 579 WP_327291653.1 TerD family protein -
  OG702_RS27660 (OG702_27690) - 6217449..6219326 (+) 1878 WP_327291654.1 TerD family protein -
  OG702_RS27665 (OG702_27695) - 6219413..6220447 (+) 1035 WP_327291655.1 TerC family protein -
  OG702_RS27670 (OG702_27700) - 6220526..6221527 (+) 1002 WP_327293400.1 cytochrome c oxidase assembly protein -

Sequence

Protein


Download         Length: 697 a.a.        Molecular weight: 78485.94 Da        Isoelectric Point: 4.6915

>NTDB_id=663164 OG702_RS27650 WP_327291652.1 6214606..6216699(+) (uvrB) [Streptomyces sp. NBC_01198]
MRPVSDIERTVAPFEVVSPFQPSGDQPTAIDDLERRIRAGEQDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYIDRMVRLKVGDVIDRDQLLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEQLAVRIEMFGDEIEALYTLHPLTG
EVITEDEQIYVFPATHYVAGPERMERAIAGIENELDGQLAQMEKQGKLLEAQRLRMRTTYDVEMMRQIGSCSGIENYSRH
IDGRVQGSAPDTLIDYFPEDFLLVVDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLTRVGQTVYL
SATPGPYELSRGDGVVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRLRTEKDERVLVTTLTKKMSEDLTDYLLELGIQV
RYLHSDIDTLRRVELLQELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPGMERAIDETNRRREKQIAYNTERGVDPQPLRKKIAGILDSFAREDADTEELLGSGRQRSRGKAPVPGLSAKPGK
RTGGALPAEELADLIGQLTDQMHAAAAELQFEVAARIRDELGDLKKELRQMRDAGMA

Nucleotide


Download         Length: 2094 bp        

>NTDB_id=663164 OG702_RS27650 WP_327291652.1 6214606..6216699(+) (uvrB) [Streptomyces sp. NBC_01198]
ATGCGGCCCGTATCAGACATCGAACGCACTGTGGCGCCTTTTGAGGTCGTCAGTCCCTTTCAGCCCAGCGGTGACCAGCC
CACCGCCATCGACGACCTGGAGCGGCGTATCCGCGCGGGCGAGCAGGACGTGGTGCTGCTGGGCGCCACCGGCACCGGCA
AGTCGGCCACCACGGCCTGGATGATCGAGCGGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTCGCGGCA
CAGCTGGCCAACGAATTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGACCGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTCCGGCACT
CCGCCACGAATTCCCTGCTGACCAGGCGCGACGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACATCGACCGGATGGTGCGCCTCAAGGTCGGCGACGTGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCGTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TGTACGAGCAGCTGGCCGTGCGGATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTACACGCTGCACCCGCTGACCGGC
GAGGTCATCACCGAGGACGAGCAGATCTACGTCTTCCCCGCCACCCACTACGTGGCGGGCCCCGAACGGATGGAACGCGC
CATCGCCGGCATCGAGAACGAGCTGGATGGCCAGCTCGCGCAGATGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACGTCGAGATGATGCGGCAGATCGGCAGCTGCTCCGGCATCGAGAACTACTCGCGGCAC
ATCGACGGCCGCGTGCAGGGCAGCGCCCCGGACACCCTCATCGACTACTTCCCCGAGGACTTCCTGCTGGTGGTGGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCGATGTACGAAGGCGACGCGTCCCGCAAGCGCACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTGACCAGGGTCGGCCAGACGGTCTACCTG
TCGGCGACCCCCGGCCCCTACGAGCTGTCCCGCGGCGACGGCGTGGTCGAGCAGATCATCCGCCCGACCGGTCTGATCGA
TCCGGAGGTCGTGGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCAGGCTGCGCACCGAGAAGGACG
AGCGGGTGCTGGTCACCACGCTGACCAAGAAGATGTCCGAGGACCTGACGGACTACCTGCTGGAGCTGGGCATCCAGGTC
CGCTATCTGCACAGCGACATCGACACCCTGCGCCGGGTCGAGCTGCTGCAGGAGCTGCGGGCCGGCGAGTACGACGTGCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGGTCAGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTGTCGGGCCAGGTGCACATGTAC
GCCGACCGGATCACCCCCGGTATGGAGCGGGCGATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGCGTGGCGTCGATCCGCAGCCGCTGCGCAAGAAGATCGCCGGCATCCTCGACTCCTTCGCCCGCGAGGACGCCGACA
CCGAGGAGCTGCTCGGCTCCGGGCGGCAGCGCTCGCGCGGCAAGGCGCCGGTGCCCGGTCTGTCGGCGAAGCCCGGCAAG
CGCACCGGGGGAGCGCTGCCCGCCGAGGAGCTGGCCGACCTGATCGGGCAGCTCACCGACCAGATGCACGCGGCGGCGGC
GGAGCTGCAGTTCGAGGTGGCCGCCCGGATCCGGGACGAACTGGGGGACCTGAAGAAGGAGTTGCGCCAGATGCGGGATG
CTGGAATGGCTTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(24-132)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(654-686)

Helicase conserved C-terminal domain (Helicase_C)

(448-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.27

96.7

0.554
  uvrB Streptococcus pneumoniae R6

57.27

96.7

0.554
  uvrB Streptococcus pneumoniae D39

57.27

96.7

0.554